Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03778 atggcaagcctcgacccaatccaaaacggcactcccgatcccctctcctccgacaatccctccgccgccgaacccccttccaccaccgccgctgacccctctctcgatgtccccgccaacaaacgctggcccggctggcccggccactgcgtcttccgcctcatcgtccccgtcctcaaagtcggcagcatcattggccgcaagggcgaactcatcaagaagacctgcgaggaaaccaaagctcgcattcgcgttcttgacggtgccctcgccactaccgatcgaatcgtactcatatcagggaaggaagagccagaggcacctctttctcctgcaatggatgctgtaataagggtttttaaacgtgtctcagggttatctgaaattgattccgagaacaaggcatctggcgttgcattttgttctggcgctattgcgctatgcaaccttgatcctggagatatcacaatggtgttgtgttgtgaaatttgcgaaaaactcaattatgaggttcccttttatgctgctgcggatgagaggattgtggaactgcagggcgaagccatgaaggtccttaaggctttggaagcagtagttgggcacctgaggaagtttttggtggatcatagtgttcttcccttgtttgagaaaacttacaatgcaacaatctcccaagagcgtcagacagatactacctgggttgacaaaccatcactgcatagtacttcacaacctagcattgtatctgatatttctctctcgacaaaaagggattctctctttgctgaccgggaaagtcagttggattcattgctacctccctccacaatgtcaatatatgggcaggattcttcactttctggtcttcgttcttcagcactcagtcgacccagtgctccaattgttaccatggtaatacagacaatgcaaataccactgtcctatgcagaggacatcatcggtatacaagggactaatattgaatacattcgccgtactagtggagccatattgactgtgcaggagagccgggtgcccgatgagattattgtggaaataaaaggcacctcatctcaggttcaaacggcacaacaattgattcaggaagttataagcaatcacaaagaacctgttactagtaattacagcaggttagatacagctctgaggtcttcttattctcaattgggcagttcatcgtacccctcatcatccttgtccacgcaaccctacagtgggtatggatcttctggtcttggaggctatagtactttcagactttga 1284 0.0 MASLDPIQNGTPDPLSSDNPSAAEPPSTTAADPSLDVPANKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGALATTDRIVLISGKEEPEAPLSPAMDAVIRVFKRVSGLSEIDSENKASGVAFCSGAIALCNLDPGDITMVLCCEICEKLNYEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNATISQERQTDTTWVDKPSLHSTSQPSIVSDISLSTKRDSLFADRESQLDSLLPPSTMSIYGQDSSLSGLRSSALSRPSAPIVTMVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVTSNYSRLDTALRSSYSQLGSSSYPSSSLSTQPYSGYGSSGLGGYSTFRL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03778 427 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 42 104 IPR036612 GO:0003723
Pste6g03778 427 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 170 397 - -
Pste6g03778 427 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 299 373 IPR036612 GO:0003723
Pste6g03778 427 Pfam KH domain 307 369 IPR004088 GO:0003723
Pste6g03778 427 Pfam KH domain 52 104 IPR004088 GO:0003723
Pste6g03778 427 CDD KH-I_PEPPER_rpt1_like 49 117 - -
Pste6g03778 427 SMART kh_6 303 372 IPR004087 GO:0003676
Pste6g03778 427 SMART kh_6 48 121 IPR004087 GO:0003676
Pste6g03778 427 MobiDBLite consensus disorder prediction 1 39 - -
Pste6g03778 427 MobiDBLite consensus disorder prediction 1 28 - -
Pste6g03778 427 Gene3D K Homology domain, type 1 302 377 IPR036612 GO:0003723
Pste6g03778 427 Gene3D - 49 139 - -
Pste6g03778 427 ProSiteProfiles Type-1 KH domain profile. 304 367 - -
Pste6g03778 427 ProSiteProfiles Type-1 KH domain profile. 49 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03778 Pste-Chr6 26935207 26941265 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03778 6 26935207 26941265 Pste6g03778 6 26935207 26941265 ECH
Pste6g03778 6 26935207 26941265 Pste2g01452 2 15821890 15831813 PCT