Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03722 atgatgtacgagcagcagcaacgatttcagcagcccatgatggatgtgaagaagaccaacacggagagaacctgcaaaggcatagaggaagagaggcttgaaatagtggacttgagtggcatgtccctcgagtcccttcccaacccctctcttaatttagccaccatttgcaagttggacctctctaataacaatcttcagaatataccggagtccttaaccgcgagactgctgaacatggtggtgttggacgtgcactccaaccagcttaggtaccttcccaattccattggctgcctctctaagctcaaggttttgaatgtttctggcaatctcatcgaataccttcccaaaacaattgaaaattgcagaagcttagaagaagtgaatgcgaacttcaacaagttgatccagctgccagaaagcatagggttggagctgttaaacctgaagaagctatcagtgaactcgaacaagctgatgttccttcctcggtcgacatcgcagctgacggcgttgaaggttctggacgcgcgtttgaactgcctgaggtctctcccggaggatctggagaacctgataaaccttgaaacgctgaacgtgagccagaacttccagtacctggaatgtgtgccctactcggtgggcctcctcttgtccctggtggaacttgacgtcagctacaacaagataaaggccttaccggactccattggctgcctcaagaagctccagaagctgtgtgtggaaggaaaccctctaacttcacctccccctgatgtggtggagcagggattgcatgcggtgaaggagtacctgtgccacaagatgaacagcggtcatcggagccccactaagaagaagtcctgggttggaaggttggtcaagtacggcactttcaacggacacaccagaactgggccccgcgaggaacgtgaggctttcatccttcctgactatagaccaattgatggcctcgcttcaccgcgctacatgggaatgttttctcctcgtcgcctcttctcagcacgtaattacttcaccaattga 1050 0.0 MMYEQQQRFQQPMMDVKKTNTERTCKGIEEERLEIVDLSGMSLESLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRYLPNSIGCLSKLKVLNVSGNLIEYLPKTIENCRSLEEVNANFNKLIQLPESIGLELLNLKKLSVNSNKLMFLPRSTSQLTALKVLDARLNCLRSLPEDLENLINLETLNVSQNFQYLECVPYSVGLLLSLVELDVSYNKIKALPDSIGCLKKLQKLCVEGNPLTSPPPDVVEQGLHAVKEYLCHKMNSGHRSPTKKKSWVGRLVKYGTFNGHTRTGPREEREAFILPDYRPIDGLASPRYMGMFSPRRLFSARNYFTN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03722 349 PANTHER - 147 265 - -
Pste6g03722 349 Gene3D Ribonuclease Inhibitor 2 140 IPR032675 -
Pste6g03722 349 SUPERFAMILY L domain-like 33 263 - -
Pste6g03722 349 ProSiteProfiles Leucine-rich repeat profile. 55 76 IPR001611 GO:0005515
Pste6g03722 349 ProSiteProfiles Leucine-rich repeat profile. 220 241 IPR001611 GO:0005515
Pste6g03722 349 SMART LRR_bac_2 241 260 - -
Pste6g03722 349 SMART LRR_bac_2 100 119 - -
Pste6g03722 349 SMART LRR_bac_2 147 166 - -
Pste6g03722 349 SMART LRR_bac_2 123 142 - -
Pste6g03722 349 SMART LRR_bac_2 218 237 - -
Pste6g03722 349 SMART LRR_bac_2 170 189 - -
Pste6g03722 349 SMART LRR_bac_2 53 72 - -
Pste6g03722 349 Pfam Leucine rich repeat 58 113 IPR001611 GO:0005515
Pste6g03722 349 Gene3D Ribonuclease Inhibitor 141 278 IPR032675 -
Pste6g03722 349 SMART LRR_typ_2 77 99 IPR003591 -
Pste6g03722 349 SMART LRR_typ_2 147 169 IPR003591 -
Pste6g03722 349 SMART LRR_typ_2 53 76 IPR003591 -
Pste6g03722 349 SMART LRR_typ_2 170 193 IPR003591 -
Pste6g03722 349 SMART LRR_typ_2 218 240 IPR003591 -
Pste6g03722 349 SMART LRR_typ_2 100 123 IPR003591 -
Pste6g03722 349 SMART LRR_typ_2 241 264 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03722 Pste-Chr6 26386729 26390547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03722 24 261 Receptor kinase-like Gene Family AT5G27060 31.837 4.66e-13 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03722 6 26386729 26390547 Pste6g03722 6 26386729 26390547 ECH
Pste6g03722 6 26386729 26390547 Pste2g01422 2 15461143 15465622 PCT