Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03690 atggcaagtaagatatttcttgcccttctgctcgtaatatctgtggttgcaacctctgctggtaacttcaacaaagactttgagataacatggggtgatggtcgtgccaaaatcatcaacaatggggaacttctcaccttgtcccttgacaaggcctctggctctggatttcgttctacaaacgaatatttgtttggaaaaattgacatgcaactaaaactcgtgccgggtaattctgcaggcacagtcacagcttattatttatcttctcttggggctactcatgatgaaattgattttgaatttctgggtaacttgagtggtgatccttatattctccataccaacgtattcacacaagggaatggtaacagggaacagcagttctatctgtgattctctgttgatgggacacccataagggagttcaagaatctagaaacaaaaggggttcgttttccaaaagaccaagccatgaggatatattcaagcctttggaatgctgatgattgggccacaaggggaggcctggtgaagactgattggagccaagccccattcacagcctcatacagaaacttcaatgctcaagcatgtgtttggacttcttcttcaggctcatcttgctcttccaaccatccaacatcaaaccaatcatggatgaaacaatcactggatgcaacagggcaagccagaattcgatgggtgcaaaagaactacatgatttacaactactgcactgatactaagcgtttccctcaaggccttcctcctgaatgcacaatcgcatga 792 0.0 MASKIFLALLLVISVVATSAGNFNKDFEITWGDGRAKIINNGELLTLSLDKASGSGFRSTNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGATHDEIDFEFLGNLSGDPYILHTNVFTQGNGNREQQFYLXFSVDGTPIREFKNLETKGVRFPKDQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNAQACVWTSSSGSSCSSNHPTSNQSWMKQSLDATGQARIRWVQKNYMIYNYCTDTKRFPQGLPPECTIA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03690 263 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 191 IPR000757 GO:0004553|GO:0005975
Pste6g03690 263 Pfam Glycosyl hydrolases family 16 24 133 IPR000757 GO:0004553|GO:0005975
Pste6g03690 263 CDD GH16_XET 18 260 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pste6g03690 263 ProSitePatterns Glycosyl hydrolases family 16 active sites. 97 107 IPR008263 GO:0004553|GO:0005975
Pste6g03690 263 PIRSF EndGlu_transf 1 134 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pste6g03690 263 PIRSF EndGlu_transf 131 263 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pste6g03690 263 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 216 260 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pste6g03690 263 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 262 IPR013320 -
Pste6g03690 263 Gene3D - 9 132 - -
Pste6g03690 263 Gene3D - 133 262 - -
Pste6g03690 263 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 17 260 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03690 Pste-Chr6 26114247 26116318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03690 3 263 Glycoside Hydrolase AT4G25810 66.548 2.00e-133 376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03690 6 26114247 26116318 Pste2g01397 2 15255015 15256628 PCT