Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01397 ACAACACCCTACTCCTACTGCTCTATAAATACCTCCAAAACATACCACTTCAAACATGCACACCACACTCAAATACTTGTCTTGGCTTCTTCTGTCCCTCTATCTATTAACCTTGCAAGTCTTGAAATGAAAAGTGTTGGGTTTCTTCTTCTTCTTGTGGTGGTGGCTGTATCTACCCTTGTGGTGGCAGTCACCGGTGGTAACTTTTACCAAGATTTTGAGATAACATGGGGTGGTAGCCGTGCCAAAATACTTGAGAATGGAAACCTTCTCACCCTGTCCCTAGACAGGGCCTCTGGTTCTGGCTTTCGTTCCAAACATGAGTACTTCTCAAGCTTGTTCCTGGTAACTCTGCTGGCACTGTCACTGCCTATTATATTCTATGTGGATGGGACCCCAATAAGAGAGTTCAAGAATTTGGAGACAAAAGGTGTTCCCTTTCCAAAGAACCAAGCCATGAGAATATACTCTAGTCTTTGGGACGCCGAGGATTGGGCCACGAGGGGTGGGCTTGTGAAGACGGATTGGAGCCAGGCCCCATTCATGGCCCAATACAGAAACTTCAACGCACAGGCCTGTGTTTGGACTGCATCAGGTTCATCATCTTGTTCTTCTTCTTCTGGCCAATCACTGGATGCCACGGGGCAGGCCAAGATTCATTGGGTGCAGAAGAATTACATGATCTACAACTACTGTACTGATTACAAACGTTTCCCTCAAGGCCTCCCTTCAGAATGTTCCATTGCATGACAAATTCACAATCATTAGTTGTTGCATATTATCAAATATAAATGGTCCCATATATAAACGTGACGCATATACCTATTACGTAAATTCCTTTTTTTGTATACATTAATGTAACTAAAACTGTTATTGTTGGTTGGTGCTTTGTTCAGCACTGCATTGTTCTTCAGAGAAGATAAATAATATATAGCGTGTAAAATGATATTCATGGCCGTGAATATGTGCTGGAATTGTATAGTATTTTCATTAATGAAATTGATGGAGTTCAAAAGTTTATGGACTTTTATAATTCGATTCA 1042 0.4155 TTPYSYCSINTSKTYHFKHAHHTQILVLASSVPLSINLASLEMKSVGFLLLLVVVAVSTLVVAVTGGNFYQDFEITWGGSRAKILENGNLLTLSLDRASGSGFRSKHEYFSSLFLVTLLALSLPIIFYVDGTPIREFKNLETKGVPFPKNQAMRIYSSLWDAEDWATRGGLVKTDWSQAPFMAQYRNFNAQACVWTASGSSSCSSSSGQSLDATGQAKIHWVQKNYMIYNYCTDYKRFPQGLPSECSIA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01397 249 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 185 IPR000757 GO:0004553|GO:0005975
Pste2g01397 249 SUPERFAMILY Concanavalin A-like lectins/glucanases 125 248 IPR013320 -
Pste2g01397 249 Pfam Glycosyl hydrolases family 16 125 177 IPR000757 GO:0004553|GO:0005975
Pste2g01397 249 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 63 114 IPR044791 GO:0004553
Pste2g01397 249 Gene3D - 124 248 - -
Pste2g01397 249 Gene3D - 54 117 - -
Pste2g01397 249 PIRSF EndGlu_transf 116 249 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pste2g01397 249 PIRSF EndGlu_transf 35 124 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pste2g01397 249 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 205 246 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01397 Pste-Chr2 15255015 15256628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01397 125 249 Glycoside Hydrolase AT4G25810 67.164 3.52e-61 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03690 6 26114247 26116318 Pste2g01397 2 15255015 15256628 PCT