Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02539 atgtcgagggtaccaagtgacgtggcaaagtcaagtgaggaggagaaagtttcagatgaacaggaggatgtcatggcttctgttttccctttccaggagcaaggccatgcatctcatttcagccaactcaacgatctctcaatctatgttctgctaagattgtcaaggtctgattatgggtcaattgcatcagtgaacaagagtttaagatcactcattcggagcggagaattgtatcggctgaggaggaaaatgggggtagtagaatattgggtttacttctcgtgcaatgtccttgaatgggaggcatttgatccaaaccgaggccgttgcatgaacttgcctagaatgcctcgtaatgactgctttatgtgttctgataaggagtcattggctgttggtacggatcttcttgtttttggaaaggaaatatttgctcctgtggtttatggatatagccttttgaccaactcatggtcaactgctacacaaatgaacactcctagatgcttgtttgcatctgcgagctgcggagaattagccatactggctggtggttgtgatccaacgggcaagatcttgagtgtagctgagtgttacaactcagacaccaaaacgtgggagtatcttccgaacatgaacaaagcaaggaaaatgtgttccggtgtgttcatagatgggaaattttatgccctcggtggaattgaagaagggaacaaagtgcagttaacatgtggtgaggagtatgatctgaagacaaaaaaatggcgtctaatacctgacatgttccctccccgaagtggtgaattggctgagatatcatctactgaggcacctcctttggttgcagttgtgaataatgtgttgtatgctgcggattatgcacagaaggaattaaggaaatatgtgaaagagacaaacagatggatcacgattggaaatcttccagagcgagtagcctcaatgaatgggtggggattagcgtttcgagcatgtggcgagaggctaatggttattggtggccctaatgctattgctggagggatgattgaaattcattcttggatcccagatgaaggtgcaccgcgctggaacctgctagccagaaccaactctggaagcttcgtatacaattgcacagtcatgggatgctga 1155 0.0 MSRVPSDVAKSSEEEKVSDEQEDVMASVFPFQEQGHASHFSQLNDLSIYVLLRLSRSDYGSIASVNKSLRSLIRSGELYRLRRKMGVVEYWVYFSCNVLEWEAFDPNRGRCMNLPRMPRNDCFMCSDKESLAVGTDLLVFGKEIFAPVVYGYSLLTNSWSTATQMNTPRCLFASASCGELAILAGGCDPTGKILSVAECYNSDTKTWEYLPNMNKARKMCSGVFIDGKFYALGGIEEGNKVQLTCGEEYDLKTKKWRLIPDMFPPRSGELAEISSTEAPPLVAVVNNVLYAADYAQKELRKYVKETNRWITIGNLPERVASMNGWGLAFRACGERLMVIGGPNAIAGGMIEIHSWIPDEGAPRWNLLARTNSGSFVYNCTVMGC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02539 384 FunFam F-box/kelch-repeat protein SKIP11 84 369 - -
Pste6g02539 384 Pfam Kelch motif 216 262 IPR006652 GO:0005515
Pste6g02539 384 Pfam Kelch motif 168 214 IPR006652 GO:0005515
Pste6g02539 384 MobiDBLite consensus disorder prediction 1 20 - -
Pste6g02539 384 SMART kelc_smart 180 227 IPR006652 GO:0005515
Pste6g02539 384 SMART kelc_smart 136 179 IPR006652 GO:0005515
Pste6g02539 384 SMART kelc_smart 228 276 IPR006652 GO:0005515
Pste6g02539 384 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 40 384 - -
Pste6g02539 384 SUPERFAMILY Kelch motif 98 381 IPR015915 GO:0005515
Pste6g02539 384 Gene3D - 81 382 IPR015915 GO:0005515
Pste6g02539 384 SUPERFAMILY F-box domain 45 123 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02539 Pste-Chr6 12647631 12649945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02539 36 256 EF-hand Containing Proteins AT4G39560 26.724 4.09e-10 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02539 6 12647631 12649945 Pste6g02539 6 12647631 12649945 ECH
Pste1g01002 1 3192693 3194298 Pste6g02539 6 12647631 12649945 PCT