Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02330 GGAGACCCTACAACTAAGCCACCAGGCTTTAATGCTTTGTTTTCAATCCTGTGGAGGGAGAGAAGATGAACCCACAACACTGAAAGTAACCTTAGAAAAACGAGAAAGTTTGCATTATTCGCAGTTTTGAAAACTCACTCAGAGTGGAGGAGAGAGTCCCACACCTAGCATTAACAAGAGGGGGAAAAAATCAACACTTTGGGCCTTCTTGTGGTCTCTCTGCAGAATCTGATTCCAATTGGAGTTCATCTTCTAAAGTGAGACTCTTTAAGGTTTGGCATCTGGGAAAATGGGTTTGGTTTCTGGGATTTTTATGGGGCTGTTGTTCGGCATAGGATTGATGGCTGGATGGGCACGCATGATGAGATACCGAAGCGCCAAAAGAATTGCAAAGGCAGCTGACATTAAACTACTTTCATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGAACATTTGCCTGAGTGGATATCTTTCCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCTGCTACTATGGTGATTAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGAACTCCTGGAATTACCTCATTGAAGTTCAGCAAACTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGATATTCTGCGCCTGCTTTTTTGCTTCCTTTTGAGGGTTTTATGGATGAGAAGTCTAGAAGAATCTAGACAATGGAAGCCATTTTCTGATCAATTTAGAGGGAGGAGACCAGGATGTATTCGTGTTCAAAGCCTAACCAAAGGTCAAATCATAATGGATATTGATTTTCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCGCTTGTTGCATCTATTCCTATTCAGTTGAAGGATCTACAGGTTTTTACCATTGTCCGTGTGATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTTGTTCCACTTGGTGGTATTCCTGTTGATATCAGTGAACTGGAGCTTAAACCCCAGGGAAAACTTTCATTGACTGTAGTGAAAGCAACTGCTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCCTATGTAGTTGTGCATATTCGACCATTATTTAAATATAAAACCAAGGTTATTGATAACAACTTGAACCCTGTATGGGATGAGAAGTTTGAATTAATTGCAGAAGACAAGGAGACACAATCACTCATTCTTGAGGTTCTTGATAAGGATATTGGGCAAGATAAGCGATTGGGAATAGTACAGTTACCCCTTATTGGTCTGGAAGCAGAAACTGAAAAGGAGATCGAATTGAGGCTACTGCCATCACTTGATACACTGAAGGTGAAAGATAAGAAAGATCGAGGAACCTTGACAGTAAAGGTCTTTTATCATCAGTTTAACAAGGAAGAACAGCTGGCTGCACTAGAAGCAGAAAAAAAGATATTAGAAGAAAGGAAGAAACTGAAAGAAGCAGGTCTGATAGGAAGCACAATGGATGCTCTAGATGGGGCTGTATCAGTAGTAGGGTCTGGAGTAGGACTTGTTGGTACGGGCGTTGTCGCTGGTGCAGGGCTTGTGGGAAGTGGTGTTGTCGCTGGTGCCGGGCTAGTGGGAAGTGGCATTGGTGCTGGAGCCGGGCTTGTTGGAAGCGGCATAGGTGCTGGAGTTGGCATTGTTGGGAGTGGTCTTGGAGCCGTTGGTAGTGGACTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTGGTGCCAGAAAGAGTGGTTCTTCAACTCCTGTCAACAATGGACAGGAAAATGGTGGTGGTACAAAGCCTCTTTGATCCCTTTCTTTGCCCTGTAAAAGTAATGAATGCACCTTAGAAGGTTCAAGCTTTGATAATAGATAGATTACCTGTGCATGTGTTGCTTTTTTCTTTACCATAATGTTTTTCTCTAAGGCTGTTAATCTTCTAGATTGACAAAATGATAGCAGAAAAGTCAAGTTAGTTCTGTTATATCATTTTTATCTGTAATTATGTTTGACGTAAATTTTTATTAAAACACAACAAATTGTAAACATTCCTTCTTTAGTTGAGTTGTATGATGCAACTTGTATCATCCTTATCTGTTTTTGACCTGGTTTTCTAATGAAG 2323 0.412 MGLVSGIFMGLLFGIGLMAGWARMMRYRSAKRIAKAADIKLLSSLNRDDLKKICGEHLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATMVIRESVEPLLEEYRTPGITSLKFSKLSLGNVAPKIEDILRLLFCFLLRVLWMRSLEESRQWKPFSDQFRGRRPGCIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDISELELKPQGKLSLTVVKATALKNMEMIGKSDPYVVVHIRPLFKYKTKVIDNNLNPVWDEKFELIAEDKETQSLILEVLDKDIGQDKRLGIVQLPLIGLEAETEKEIELRLLPSLDTLKVKDKKDRGTLTVKVFYHQFNKEEQLAALEAEKKILEERKKLKEAGLIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGVVAGAGLVGSGIGAGAGLVGSGIGAGVGIVGSGLGAVGSGLSKAGKFMGRTITGHSGARKSGSSTPVNNGQENGGGTKPL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02330 573 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 300 429 IPR035892 -
Pste6g02330 573 ProSiteProfiles C2 domain profile. 285 403 IPR000008 -
Pste6g02330 573 MobiDBLite consensus disorder prediction 549 573 - -
Pste6g02330 573 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 455 IPR045050 GO:0008289
Pste6g02330 573 FunFam synaptotagmin-4 isoform X1 297 455 - -
Pste6g02330 573 Coils Coil 429 456 - -
Pste6g02330 573 Pfam C2 domain 302 396 IPR000008 -
Pste6g02330 573 CDD C2 304 398 - -
Pste6g02330 573 MobiDBLite consensus disorder prediction 545 573 - -
Pste6g02330 573 CDD SMP_SYT 59 286 - -
Pste6g02330 573 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 287 IPR031468 GO:0008289
Pste6g02330 573 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 169 286 IPR039010 -
Pste6g02330 573 Gene3D C2 domain 297 455 IPR035892 -
Pste6g02330 573 SMART C2_3c 303 400 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02330 Pste-Chr6 11307407 11319349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02330 298 388 Lipid Metabolism Gene Families AT3G61300 32.967 7.81e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02330 6 11307407 11319349 Pste6g02330 6 11307407 11319349 ECH
Pste5g01627 5 10357470 10367884 Pste6g02330 6 11307407 11319349 PCT