Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01856 ATGGCTTCCGAGAATGTGAAGACCGGGGATTCCGCCGTGACGACCATCGTCAATCTCGCCGAGGAGGCCAAGCTCGCCCGAGAAGGCGTCGTCAAGGCTCCTAGCTACGCGCTCGCCAGCATCTGCAAGTCACTCGTCGCCGGTGGCGTCGCCGGAGGAGTGTCACGTACTGCAGTTGCTCCACTGGAACGGCTGAAAATTTTGCTGCAGGTCCAGAATCCTCATAACATTAAATACAATGGAACAATACAAGGCCTAAAATATATATGGAGAACTGAAGGTTTCCGTGGACTTTTCAAAGGAAATGGTACTAACTGTGCTCGAATTGTCCCAAATTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCGAAAGGTATACTGCATCTGTATCAGCAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTTTACGTCTTGGAGCTGGAGCATGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGATATGGTTCGAGGCAGGATTACTGTGCAGACTGAGGCATCTCCATATCAATACAGAGGAATGTTTCATGCTTTATCTACTGTGCTTAGGGAAGAAGGTCCCCGTGCTTTATATAAGGGCTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTCTATGAGTCTCTAAAAGATTGGTTAATTAAATCCAACCCATTTAATCTAGTTGAAAATTCTGAGTTGAGTGTGACAACACGCTTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGACGTTATTCGTCGCAGAATGCAGATGGTTGGTTGGAACCATGCTGCTTCTGTTCTAACTGGAGATGGAAGAGGCAAAGTCCCGCTTGAATACACTGGAATGGTTGATGCATTCAGGAAAACAGTTCAGCATGAGGGATTTGGTGCATTATACAAGGGTCTGGTGCCCAACTCTGTAAAGGTGGTCCCATCAATAGCAATTGCATTCGTAACATATGAGGTGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGAATAA 1068 0.4588 MASENVKTGDSAVTTIVNLAEEAKLAREGVVKAPSYALASICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYQQQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPFNLVENSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRGKVPLEYTGMVDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEIRISE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01856 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Pste6g01856 355 Pfam Mitochondrial carrier protein 40 126 IPR018108 -
Pste6g01856 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Pste6g01856 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Pste6g01856 355 Gene3D Mitochondrial carrier domain 37 349 IPR023395 -
Pste6g01856 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Pste6g01856 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
Pste6g01856 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Pste6g01856 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Pste6g01856 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Pste6g01856 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Pste6g01856 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Pste6g01856 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Pste6g01856 355 PANTHER SOLUTE CARRIER FAMILY 25 39 349 - -
Pste6g01856 355 FunFam Mitochondrial substrate carrier 37 349 - -
Pste6g01856 355 SUPERFAMILY Mitochondrial carrier 40 342 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01856 Pste-Chr6 8554313 8558581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01856 45 350 EF-hand Containing Proteins AT5G51050 38.436 3.83e-66 215
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01856 6 8554313 8558581 Pste6g01856 6 8554313 8558581 ECH
Pste5g03429 5 27597313 27608219 Pste6g01856 6 8554313 8558581 PCT