Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03429 ATGCAGGAGGAAAAAGCGAGAAACTTTAGTTGGGGAGTGATGTTAGGGTGTGTCCACGTTAGGGTTTCCATGGCTTCCGAGACTAAGATCGTCAATCTCGCTGAGGAAGCCAAGCTCGCCACAGAAGCTGTCCACCCTCCCACCTACGCTTTCACCAGTATCTGCAAGTCCCTCGTCGCCGGTGGAGTCGCCGGAGGAGTATCTCGAACAGCAGTTGCTCCACTGGAGCGGTTGAAGATTTTGCTACAGGTTCAGAATCCACACAACATAAAATACAATGGAACAATTCAAGGTCTAAAATATATATGGAGAACTGAAGGTTTTCGTGGGCTGTTCAAAGGGAATGGTACTAATTGTGCTCGAATTGTCCCTAATTCTGCGGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAAGGTATACTACACCTGTATCAGAAGGAAACTGGAAACGAGGATGCTCAGCTGACTCCTCTTTTACGTCTTGGTGCTGGAGCATGTGCGGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGAATAACTGTACAGACAGAAAAGTCCCCTTACCAGTACAGAGGAATGTTTCATGCTCTGTCAACTGTACTCAGGGAAGAAGGTCCACGGGCTTTATACAAGGGCTGGCTTCCTTCAGTCATTGGTGTTATTCCTTATGTGGGTCTCAACTTTGCTGTGTATGAGTCTTTGAAAGATTGGTTAATTAAATCAAATCCATTTCATCTAGTTCAAGATTCTGAGTTGAGTGTGACCACTCGCCTGGCTTGCGGTGCTGCAGCTGGAACTATTGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGTAGAATGCAGATGGTGGGTTGGAACCATGCTGCTTCTGTTATAGCTGGTGATGGAAGAGGGAAGGTACCACTTCAATACACTGGCATGGTTGATGCTTTTAGGAAAACTGTTCGGTATGAAGGATTTGGCGCATTATACAAGGGTCTAGTTCCGAATTCTGTAAAGGTGGTCCCATCCATAGCAATTGCATTTGTAACATATGAGGTGGTGAAAGACATTTTAGGTGTGGAGATCAGAATATCAGACTAAAGATTGCTATCCATGTGATATTTTATTGCCTGTTATTTTCTTGTAAGCAAGGGCATGCAGAGATGTTAAATTAGTGTTATTTTCTAGTTTTTCATCACTTCAATGAGTTAGGAAGCACTCGAGTTAGGGTGTAATTAATTCCCTTGCATCCCATTAGTTTTTCACGAACAAATATAGCTTTTAGCTTCTTATTCATCTACCATGGCAATAAATGTTGTGGAAAAACAATGCAAGGACATGTCTGCATGCCTTTCTGCACGAGTAAATTTTATTGGTGAAATATCCAATGACTGATTACTGAAATCGTATTTGCGTTCTTGTCTGCAAGTTACTAAGCAGCCATTCTTCCTTTTATGCTGTCAAACGACCATGACGATAGGGTTGCAAGTTTTGGCATGAGAAAGTTGGATGCATTAATCGTCCATGAGGATTGCAAGTTTTACTACAATGTAATTGACCGGATAAGTTAAAAGTGAGTTGTAGTGTTATATTTATCTTATTTATGGTTAATGGGATTTCGTTGTTTTCAGCACATTTCTGGAAATAGTAATTTTGATCCTCGGTCTTTCAGTG 1680 0.4202 MQEEKARNFSWGVMLGCVHVRVSMASETKIVNLAEEAKLATEAVHPPTYAFTSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYQKETGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPFHLVQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWNHAASVIAGDGRGKVPLQYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEIRISD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03429 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 258 359 IPR018108 -
Pste5g03429 368 Pfam Mitochondrial carrier protein 155 247 IPR018108 -
Pste5g03429 368 Pfam Mitochondrial carrier protein 53 139 IPR018108 -
Pste5g03429 368 Pfam Mitochondrial carrier protein 257 360 IPR018108 -
Pste5g03429 368 Gene3D Mitochondrial carrier domain 50 362 IPR023395 -
Pste5g03429 368 SUPERFAMILY Mitochondrial carrier 53 355 IPR023395 -
Pste5g03429 368 FunFam Mitochondrial substrate carrier 50 362 - -
Pste5g03429 368 PRINTS Mitochondrial carrier protein signature 216 234 IPR002067 GO:0055085
Pste5g03429 368 PRINTS Mitochondrial carrier protein signature 114 134 IPR002067 GO:0055085
Pste5g03429 368 PRINTS Mitochondrial carrier protein signature 267 289 IPR002067 GO:0055085
Pste5g03429 368 PRINTS Mitochondrial carrier protein signature 70 84 IPR002067 GO:0055085
Pste5g03429 368 PRINTS Mitochondrial carrier protein signature 57 70 IPR002067 GO:0055085
Pste5g03429 368 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Pste5g03429 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 155 243 IPR018108 -
Pste5g03429 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 139 IPR018108 -
Pste5g03429 368 PANTHER SOLUTE CARRIER FAMILY 25 52 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03429 Pste-Chr5 27597313 27608219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03429 58 363 EF-hand Containing Proteins AT5G51050 39.088 1.47e-67 219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03429 5 27597313 27608219 Pste6g01856 6 8554313 8558581 PCT