Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01806 atgaacaacacgaacagcaatccaattaagaatgccgcaacgccgtcgtttttcagcaaccctggggcgccctccattcccattaaccacccaccaccacaccttctctcacagacgcagcctcaaccacaaggtgccgcctctcacttccacggccactttcagctctcacaaccccaaacccacttggtcgcacagcaaccacacccaaacccacacccacacccacacccacacccacacccacacccacacccgcaagtgcacagcaatgccaacacccacgtggcagcccctgcgcctcccaagcgcgcaaatcagaaacccccttctcgccctcccggttcctccaacgccacccaatcctctgccttcaagaccatggaacttaccgttgctcctccgcggaaaaagagaagcttcccagataagctcattcccgaaaaggtcgccaagctcttgcccgagtctgctatttatgctaagttgcttcaactcgagactcaaatagattctgctttggttaggaagaaaattgatgtgcaggaagctgttagaaaccctccctgtcttaggaaaacgcttagaatttatgtctataacactttttcaaatcaggtcaacgcggaggagtcttcttgggcccttaggataaccggaagagtcttggaagatggtaaggattctgtggcagaaggagtttcgcccaaggaatatccaaagttctccactttcttcaacaagattaccatatacttggaccagagttcctatccggataatcatgttcttgtgtgggataatgctcgatcctcttcccaacgtgatggttttgaggtgaagaggaaaggggataaggaattcactgtggtggttagaatggccatgaactattcacctgacaagtttgtggtttcagcacaactcgcaagagttttaggggttgagtttgactcacgccctaggatcatagctgccctttggcactatgtcaagtctaagaagctgcagagccccaatgatccttccttcttcatctgtgatgcttctcttcaaaaggtctttggggaggagaagatcaaattctctgtggtgtcacagaagatatcacagcatttgtcacagcctcagcctatacacctagagcatcaaatcaagctttctggaaatggtccagctggagctacaagttatgatgttcaggttgatttgcctcttccgctagagaaggatatgtctgcgtttttgacaagcactgagatgcacaaagagattgatgcttttgatgagctaatatgtcattccattaagaagattcatgaacatcataggagacgggccttctttctcggctttagtcagtccccagcagagtttattaatgctttaatcctttctcaaagcaaggatctgaagcttgttgctggagatgtgagccataatgctgaaactgaacgacggtctgaattctacaatcaaccatgggttgaggatgcagtcattcgctacctgacccggaaaaatgctcggagtgattga 1539 0.0 MNNTNSNPIKNAATPSFFSNPGAPSIPINHPPPHLLSQTQPQPQGAASHFHGHFQLSQPQTHLVAQQPHPNPHPHPHPHPHPHPHPQVHSNANTHVAAPAPPKRANQKPPSRPPGSSNATQSSAFKTMELTVAPPRKKRSFPDKLIPEKVAKLLPESAIYAKLLQLETQIDSALVRKKIDVQEAVRNPPCLRKTLRIYVYNTFSNQVNAEESSWALRITGRVLEDGKDSVAEGVSPKEYPKFSTFFNKITIYLDQSSYPDNHVLVWDNARSSSQRDGFEVKRKGDKEFTVVVRMAMNYSPDKFVVSAQLARVLGVEFDSRPRIIAALWHYVKSKKLQSPNDPSFFICDASLQKVFGEEKIKFSVVSQKISQHLSQPQPIHLEHQIKLSGNGPAGATSYDVQVDLPLPLEKDMSAFLTSTEMHKEIDAFDELICHSIKKIHEHHRRRAFFLGFSQSPAEFINALILSQSKDLKLVAGDVSHNAETERRSEFYNQPWVEDAVIRYLTRKNARSD 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01806 512 MobiDBLite consensus disorder prediction 110 128 - -
Pste6g01806 512 Gene3D SWIB/MDM2 domain 295 380 IPR036885 -
Pste6g01806 512 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 134 472 - -
Pste6g01806 512 SMART swib_2 299 378 IPR019835 -
Pste6g01806 512 MobiDBLite consensus disorder prediction 1 23 - -
Pste6g01806 512 Pfam SWIB/MDM2 domain 302 373 IPR003121 -
Pste6g01806 512 MobiDBLite consensus disorder prediction 1 140 - -
Pste6g01806 512 CDD SWIB_like 305 373 - -
Pste6g01806 512 SUPERFAMILY SWIB/MDM2 domain 294 383 IPR036885 -
Pste6g01806 512 ProSiteProfiles SWIB/MDM2 domain profile. 298 375 IPR003121 -
Pste6g01806 512 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01806 Pste-Chr6 8256645 8263436 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pste6g01806 SWIB 1.3e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01806 6 8256645 8263436 Pste2g00395 2 3399287 3401412 ECH
Pste6g01806 6 8256645 8263436 Pste6g01806 6 8256645 8263436 ECH
Pste6g01806 6 8256645 8263436 Pste2g00395 2 3399287 3401412 PCT