Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00395 ATGAATAATCAAGCCAAGAATGTTGCTGCCTCGTCTCTGTTTACTAATTCTGGAATGGCCCCACAGCAACACCACCCTATCCCCATTCAGCAGTGGAACCATCCTACCCCTTTACTGTCTCATTTTTCAGAGCCACAATCACAAGTGCAGTCTCAGGCTGCACGTGCTCATCTTCAACCTCAAACTCAGCCTTTTGCCCACTTGCATAGTGTAAATACTAATACTGTTAATAGTTCATCAAGTCCAGCCACTGGAAGTGGCAAGCGATCAAATCCAAGACCCTCGTTGAGGTCTCATACTTCATCGAATATGAACGCATCCACACCGTTTAAGACCATGGAATTGACCCCGGCTGCTCTGCAAAAAAAGCAAACACCAGAAAAGATTGCTGCACTTTTGCCTGAGTCTGCTCTTTATACTCAATTGCTTGATTTTGAGGCTCAGGTAGATGCTACTTTAGCCATGAGAAAGATTGATCTACAGGAGGCTAGGCTCCCTCCCCATGTTCAGAAAACACTTCGTGTTTATGTGTTTAATACCTTCTCAAATCATGCAGAAATGGATTTTGAGAATAAAAAGGCTGATGAATCTTCATGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTATGGATTCTGCGTCTGGAATTTTGCAGAGATCAAGTCCTTCATACCCAAAGTTCTCTGCATTTTTCAAAAAAATTACCATACACTTGGACCAAAGCCTTTATGATGATAATCATGTCATTGTATGGGACAGTGCTCGTTCACCTACTCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAGTTTACTGCAGTGATTGCAATCGAAATGAATTATACACCTGAAAAGTTTATGGTTTCATCACAACTGTCTAAACTCTTAGGGATTGAGGTTGAGACTCGCCCTAGAATAATAGCTTCTCTTTTTAACTATGTGAAGTCCAGGAAGCTACAGAATCCAAATGACCCTTCATTCTTCATGTGTGATCCTTCTCTACAAATGGTGTTTGGGGAAGAGAACATGAATTTTACCATGTTTTCTCAGAAGTTATCACAGCATTTGTCTCCACCACAGCCAATACATCTTGAGCATAACATCAAGCTTTCTGGTCATTCTCCAGCTGTATCTGCATGTTATGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGATAAGTCTACTTTCTTGGCAAGCCTTGAGAGTCAAAAGGAGATTGAAGCTTATGACGAGGCAATTTACTCTTCCTTAAAGAAGATCCAGGAGCATTGTAGAAGACGCGCTTTTTTTCTTAGCTTTAGTCAGTCTCCAGCTGAGTTTGTCGATACTTTGATTGCTTCTCAGAGGAAGGATTTAAAACTTGTTGCTGGAAATAGCCATAATGTTGAAAAGGACCTTCATACTGAATTCTTCAATCAACCATGGGTTGAGGATGCTGCCATTCGTTACTTGAACCGCAAAACTGCTGGAAGTGATGCTCCTGGACGCCACTAAGAAAATATTGTAGGTGGATTTCTATTTTATTTTCTAACAAGTCAATATACTTTCTTTTCTTAATCTTTGTTAGGAAAGAAAGTTTTGAGTACCTAAATGAGAAATAGAAGAAAGGAAAGAATGTAGGAACAAGGAAAATGTTTTATAGATAGTGAAAATTAAGGTGAGTGTGATTAGAAATTCCATAGTATGCACAGAGGCTTA 1716 0.3992 MNNQAKNVAASSLFTNSGMAPQQHHPIPIQQWNHPTPLLSHFSEPQSQVQSQAARAHLQPQTQPFAHLHSVNTNTVNSSSSPATGSGKRSNPRPSLRSHTSSNMNASTPFKTMELTPAALQKKQTPEKIAALLPESALYTQLLDFEAQVDATLAMRKIDLQEARLPPHVQKTLRVYVFNTFSNHAEMDFENKKADESSWSLKITGRILEDGMDSASGILQRSSPSYPKFSAFFKKITIHLDQSLYDDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPEKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQNPNDPSFFMCDPSLQMVFGEENMNFTMFSQKLSQHLSPPQPIHLEHNIKLSGHSPAVSACYDIQVDVPFPLEKDKSTFLASLESQKEIEAYDEAIYSSLKKIQEHCRRRAFFLSFSQSPAEFVDTLIASQRKDLKLVAGNSHNVEKDLHTEFFNQPWVEDAAIRYLNRKTAGSDAPGRH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00395 503 SUPERFAMILY SWIB/MDM2 domain 281 370 IPR036885 -
Pste2g00395 503 ProSiteProfiles SWIB/MDM2 domain profile. 285 362 IPR003121 -
Pste2g00395 503 Pfam SWIB/MDM2 domain 289 360 IPR003121 -
Pste2g00395 503 CDD SWIB_like 292 360 - -
Pste2g00395 503 MobiDBLite consensus disorder prediction 72 110 - -
Pste2g00395 503 Gene3D SWIB/MDM2 domain 282 367 IPR036885 -
Pste2g00395 503 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 106 459 - -
Pste2g00395 503 MobiDBLite consensus disorder prediction 38 59 - -
Pste2g00395 503 SMART swib_2 286 365 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00395 Pste-Chr2 3399287 3401412 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pste2g00395 SWIB 5.5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01806 6 8256645 8263436 Pste2g00395 2 3399287 3401412 ECH
Pste2g00395 2 3399287 3401412 Pste2g00395 2 3399287 3401412 ECH
Pste6g01806 6 8256645 8263436 Pste2g00395 2 3399287 3401412 PCT