Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01702 atggcaagacccgacactcggagagcggctgtgggatcttcggaaccgctatctgatatgagaaacaatgtggggattctcgctctcgacatctacttcccttccacctgtattcaacaggtcaacacttctctctctctcaatttcacttctcctgaagtgcttgaggctcatgatggtgccagtaaagggaagtatactattggacttggtcaagattgcatggcgttttgtacagaactagaagatgtcatatcaatgagtttgacagtagtttcttcccttcttgagaagtatgagattgatcctaaacaaattggtcgtctggaagtaggcagtgagactgtgattgacaaaagcaaatccatcaaaactttcctgatgcagatctttgagtcgatgttgagcctatcagacagcacagctgaagtggttcataaccatctggggaaaaatggaaatactgatattgagggcgttgattctactaatgcatgctatggaggaactgctgcattgttcaattgtgtcaattgggtggaaagcagctcatgggatggacgctatggacttgttgtctgcactgacagtgctgtctatgctgaaggacctgcacggcctactggtggagctgccgctgttgccatgctaattggtcctgatgctcccattgcttttgaaagcaaattgaggggaagtcatatggctcatgcctatgatttttacaagcctaatcttgccagtgaatatccagttgttgatgggaagctttctcaaacttgctaccttatggcccttgattcttgctataatcacttaagtcacaagtatgagaaactgaagggaaaccaattttctatttctgatgctgaatactttgtatttcactctccatataacaagcttgtgcagaaaagttttgctcgtttggtgttcaatgacttcttgaaaaatcccagttttgtagatgaggttgccaaagaaaagctggaaccttttctaacattatctggtgatgaaagctatcaaagccgggatctagaaaaggcatcccagcaagttgcaaagcctcaatacgatgcaaaggtgcaaccatccaccttgataccgaaacaagttggcaacatgtacaccgcatctctttatgcagcatttatttcccttattcacaacaaacatagcacgttggatggtaagagggtaatattgttctcgtatggaagtggcttaacttccacaatgttctctttgcaattacgtgaaggtcaacatccatttagcttgtcaaacattgctaaagtgatggatgttgctggaaaattgaagtcaaggcatgagtttcctccagagaaatttgttgaaatcatgaagctaatggaacatagatacggtggcaaggagtttgtaacaaggaaggacacgagccttttatctccaggcacattctatctcgcggaagttgactccatgtataggagattctatgggaagaaagctagtgaaaatggtttgcctcgtgcagaaaatggtttgatcaccaatggtcactga 1551 0.0 MARPDTRRAAVGSSEPLSDMRNNVGILALDIYFPSTCIQQVNTSLSLNFTSPEVLEAHDGASKGKYTIGLGQDCMAFCTELEDVISMSLTVVSSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFESMLSLSDSTAEVVHNHLGKNGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKLKGNQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFLKNPSFVDEVAKEKLEPFLTLSGDESYQSRDLEKASQQVAKPQYDAKVQPSTLIPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSGLTSTMFSLQLREGQHPFSLSNIAKVMDVAGKLKSRHEFPPEKFVEIMKLMEHRYGGKEFVTRKDTSLLSPGTFYLAEVDSMYRRFYGKKASENGLPRAENGLITNGH 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01702 516 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 19 499 - -
Pste6g01702 516 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 224 498 IPR013746 GO:0004421|GO:0006084|GO:0010142
Pste6g01702 516 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 154 169 IPR000590 GO:0004421|GO:0008299
Pste6g01702 516 Gene3D - 20 500 IPR016039 GO:0016746
Pste6g01702 516 SUPERFAMILY Thiolase-like 23 221 IPR016039 GO:0016746
Pste6g01702 516 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 20 498 - -
Pste6g01702 516 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 22 223 IPR013528 -
Pste6g01702 516 SUPERFAMILY Thiolase-like 224 495 IPR016039 GO:0016746
Pste6g01702 516 CDD init_cond_enzymes 23 417 - -
Pste6g01702 516 NCBIfam hydroxymethylglutaryl-CoA synthase 21 498 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01702 Pste-Chr6 7575541 7581019 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01702 6 7575541 7581019 Pste6g01702 6 7575541 7581019 ECH
Pste6g01702 6 7575541 7581019 Pste1g00524 1 1676685 1682985 PCT