Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01676 atggaccgctcatcccgtcaccggaatgttcctccggccgccgcgtccgccgccactctccgccacgtggaccgcttgatcaactccaactactacacctctccgtccaggacaatctactccgaccgcttcattcccagcagatctgcgtccaaattcgcgctcttcgacatctccacgccgcccgagggccgcgacgacagttccagcgcctacaccacgctcctccgcgccgcgctgttcggccccgacgccgccggcgttgcgccgccgctcactccggagaaaaatgcctcgccggcgatgacgctacccagccggaacattttccggtacaagaccgagacgcggcagtcaatgcactcgctctcgccgtttatgtgcgacgattccgttcccggcgttgttcacggcccggtcaaagctccgaggaaggttccgaggtcgccttttaaggttctggatgcgcctgcgctgcaagatgatttttatctgaatcttgtagattggtcttcgcataatgtgttggctgttggtttgggtaactgtgtttatctctggaatgcctgtagcagcaaggttactaaattatgtgacttggggattgatgaccttgtttgttcggttggctgggctcaacgtggtacacaccttgctgttggaactagcaatggtaaagttcagtgcggctgtgactgcggttgtgatgtcatgaagaacctaaaaatagactttaaggctgcaattgtggttgcaaatcgtgttttaaaagctttagacatgacaattgatataaccctttctctagaagctaaagcctattggagggtagagactccactaaggatgggaatactcaaggttgtcaaactcaggacttgtgcaaaattggttgaacttgcaatttcagaggctggtttgattttactatcatctcttccgatcatcattagtgaaggcctattgtctcatctctattttctatgtctctcttctgatgctgtgattctcggatttctctattttgtctctctgttaaagcagagcaggaaccaggagctgcaaactgtttacaagcctacaaggagcaagcctgattttcgtcacttttctgtctctgctatttgggatgcatctcgatgcaagaagataagatctatggagggtcatcggttacgtgttggggccttggcctggagttcatctcttttgtcttctggtggcagggataaaaatatttaccaaagagatatccgtgcacaagaagattttgtcagtaaactgtcaggacacaaatcagaggtttgtggactgaagtggtcttatgataaccgtgagttggcatctggaggaaacgacaacagactgtttgtttggaatcaacattcaactcaacctgtcctgaagtattgtgagcatacagcagctgttaaagctattgcatggtctcctcatcttcatggtcttctcgcatctgggggaggaactgcagaccgatgcatacgtttctggaatacaacaacaaactcacacttaagctgcatggacacaggaagtcaggtttgcaatcttgtatggtccaaaaatgttaatgaactagtaagcacacatggctattcccagaaccagataattgtttggagataccccactatgtcaaagttggccactcttacgggtcatacctacagagttctttatctggccatttctcctgatggacagactattgtaactggagctggagatgaaacacttagattctggaatgttttcccttctcctaaatcacagaatactgacagtgaaatcggagcatcatctcttggaagaactattattagaaagaaatttcagaacagagagcaccatggtgaaaaaacttaccatgtgaaagagattataacaatggaatgcttaaacgagagcattgcaggcagctag 1944 0.0 MDRSSRHRNVPPAAASAATLRHVDRLINSNYYTSPSRTIYSDRFIPSRSASKFALFDISTPPEGRDDSSSAYTTLLRAALFGPDAAGVAPPLTPEKNASPAMTLPSRNIFRYKTETRQSMHSLSPFMCDDSVPGVVHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQCGCDCGCDVMKNLKIDFKAAIVVANRVLKALDMTIDITLSLEAKAYWRVETPLRMGILKVVKLRTCAKLVELAISEAGLILLSSLPIIISEGLLSHLYFLCLSSDAVILGFLYFVSLLKQSRNQELQTVYKPTRSKPDFRHFSVSAIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIRKKFQNREHHGEKTYHVKEIITMECLNESIAGS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01676 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 591 - -
Pste6g01676 647 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 373 610 IPR033010 GO:0010997|GO:0097027|GO:1904668
Pste6g01676 647 Pfam WD domain, G-beta repeat 554 590 IPR001680 GO:0005515
Pste6g01676 647 Pfam WD domain, G-beta repeat 465 505 IPR001680 GO:0005515
Pste6g01676 647 Pfam WD domain, G-beta repeat 425 460 IPR001680 GO:0005515
Pste6g01676 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 469 IPR001680 GO:0005515
Pste6g01676 647 SUPERFAMILY WD40 repeat-like 375 598 IPR036322 GO:0005515
Pste6g01676 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 591 IPR001680 GO:0005515
Pste6g01676 647 ProSitePatterns Trp-Asp (WD) repeats signature. 577 591 IPR019775 -
Pste6g01676 647 SMART WD40_4 463 505 IPR001680 GO:0005515
Pste6g01676 647 SMART WD40_4 147 188 IPR001680 GO:0005515
Pste6g01676 647 SMART WD40_4 551 590 IPR001680 GO:0005515
Pste6g01676 647 SMART WD40_4 380 417 IPR001680 GO:0005515
Pste6g01676 647 SMART WD40_4 191 231 IPR001680 GO:0005515
Pste6g01676 647 SMART WD40_4 421 460 IPR001680 GO:0005515
Pste6g01676 647 SUPERFAMILY Nucleoporin domain 150 228 - -
Pste6g01676 647 Gene3D - 340 595 IPR015943 GO:0005515
Pste6g01676 647 Gene3D - 107 239 IPR015943 GO:0005515
Pste6g01676 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01676 Pste-Chr6 7383962 7395460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01676 445 591 Miscellaneous Gene Families AT5G08390 22.449 9.22e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01676 6 7383962 7395460 Pste6g01676 6 7383962 7395460 ECH
Pste6g01676 6 7383962 7395460 Pste1g00622 1 2008820 2014232 PCT