Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00622 ATAGATTTTCCCGCTAAAACGCGCCTATTTCCCGGCAAAAATATTATAGAGCTTTCAATTTCGAGGAAGAAGAAGAGAAATTGGTTGGATTATTATGGGCGATTCATTGGCTCCAACGTCCTCATACCTGCACAACCATGTGAAACGAATGTTAGACTCGGATCGATACAAGTCACCTTCGAAAACAATCTACTCCGACAGGTTTATACCTAGCAGATCTGGTTCCAATTTCGCTCTCTTTAACTTATCGCCGCCATCGGATGACAGTTGCAGTTGCAGCCCCTACGGCACCGCACTGCGGAGTGCCTTGTTCGGACCAGACACCCCCGACAAATATGAAAGCCCTAATATATTTCGTTACAAAACGGAGACTCGACAGTCCATGCGCCCTCTCTCACACACCCCTTTCACTTCCCATGATCACCTTCTCCCTTATTACGACCACTATCATAAACCTATTAAGCGTCCTCGCAAGATTACTCCCTCCTCTTTTAAGGTTTTGGACGCCCCTGCGCTGCAAGACGATTTTTATCTGAATCTCGTCGATTGGTCCTCCAACAATGTCTTGGCCGTCGCTCTTGAAAACTCTGTTTATTTGTGGAATGCTTCTAGTTGCAAGGTAACTAAATTATGTGATTTGGGGAGTGATGAATCCGTTTGTTCGGTTGGCTGGGCTCCACTTGGTACCTACCTGGCTGTTGGATCAAACAGTGGAAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGTTTGCGTGTAGGGGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGTCGGGATAAAAGCATTTATCAACGAGATATACGTACACAGGAGGATTTTGTTAGTAAACTGTCTGGGCACAAGTCGGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGGGAGTTAGCATCAGGAGGAAATGACAACAAGTTGCTTGTTTGGAATCAAAACTCAACCCAACCCGTCCTGAAGTTCTGTGAGCATACTGCAGCTGTAAAAGCTATTGCCTGGTCTCCTCATGTAAATGGACTTCTTGCATCTGGAGGAGGAACTGCAGACCGCAGCATTCGATTCTGGAATACAACCACAAACTCACAGTTAAACTGTATTGACACTGGAAGTCAGGTTTGTAATCTTGTTTGGTCTAAAAATGTCAATGAACTGGTAAGCACACATGGGTACTCCCAGAACCAGATAATAGTTTGGAGATACCCTACCATGTCAAAGCTAGCAACACTTACAGGCCATACTTACAGAGTTCTTTATCTTGCCATATCTCCTGATGGGCAGACTATTGTCACTGGAGCTGGAGATGAAACTCTTAGGTTTTGGAGTGTATTCCCTTCGCGGAAATCACAGAATACTGAGAGTGAAATTGGAGCATCATCTCTTGGAAGAACTACAATCAGATGATTCCAACTAGCATATATTTTTAAACAAGTGGCTGAGAGAAATTTTAGAACAGCAAGAACACCCCGGTGGAAAATTTTGTATGGAAAGACATCACCGTGGTCTGCAATACTAATTGGGGAAACCTTATGGGTGGGTGCCAGTGCCATGAGTTGTTTTGTTGAGCATCTTATAGTTTATCTCTACATGTTAAAAGGGAGTTGAAGCCAACTTTGGTTTTCTCCTATTTTTGTGTTTCCAGTAATTTAAAATTACATAGAAGCACCACATGTAACGGAC 1726 0.4374 MGDSLAPTSSYLHNHVKRMLDSDRYKSPSKTIYSDRFIPSRSGSNFALFNLSPPSDDSCSCSPYGTALRSALFGPDTPDKYESPNIFRYKTETRQSMRPLSHTPFTSHDHLLPYYDHYHKPIKRPRKITPSSFKVLDAPALQDDFYLNLVDWSSNNVLAVALENSVYLWNASSCKVTKLCDLGSDESVCSVGWAPLGTYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGALAWSSSLLSSGGRDKSIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPVLKFCEHTAAVKAIAWSPHVNGLLASGGGTADRSIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWSVFPSRKSQNTESEIGASSLGRTTIR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00622 451 Gene3D - 122 430 IPR015943 GO:0005515
Pste1g00622 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Pste1g00622 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Pste1g00622 451 Pfam Anaphase-promoting complex subunit 4 WD40 domain 156 237 IPR024977 -
Pste1g00622 451 SUPERFAMILY WD40 repeat-like 142 427 IPR036322 GO:0005515
Pste1g00622 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Pste1g00622 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Pste1g00622 451 Pfam WD domain, G-beta repeat 261 296 IPR001680 GO:0005515
Pste1g00622 451 Pfam WD domain, G-beta repeat 301 341 IPR001680 GO:0005515
Pste1g00622 451 Pfam WD domain, G-beta repeat 390 426 IPR001680 GO:0005515
Pste1g00622 451 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 22 448 IPR033010 GO:0010997|GO:0097027|GO:1904668
Pste1g00622 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Pste1g00622 451 SMART WD40_4 387 426 IPR001680 GO:0005515
Pste1g00622 451 SMART WD40_4 216 253 IPR001680 GO:0005515
Pste1g00622 451 SMART WD40_4 257 296 IPR001680 GO:0005515
Pste1g00622 451 SMART WD40_4 173 213 IPR001680 GO:0005515
Pste1g00622 451 SMART WD40_4 129 170 IPR001680 GO:0005515
Pste1g00622 451 SMART WD40_4 344 384 IPR001680 GO:0005515
Pste1g00622 451 SMART WD40_4 299 341 IPR001680 GO:0005515
Pste1g00622 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Pste1g00622 451 FunFam FIZZY-related 2 isoform 1 129 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00622 Pste-Chr1 2008820 2014232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00622 200 431 Miscellaneous Gene Families AT5G08390 21.277 9.98e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00622 1 2008820 2014232 Pste1g00622 1 2008820 2014232 ECH
Pste6g01676 6 7383962 7395460 Pste1g00622 1 2008820 2014232 PCT