Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste6g01108 | GAAAAATCAATGAATAGAAGGGAGCATATATTATTGGCGAGTATAGTTCTGTGTCTATAAATAGGAGTCTTGGGTTTGTGGCAAAACGCAAGCTTGAAGGTGGGTGTGGATAACATAAAGTAGGAAAGATGTTTGGGATCTTAGGAGGAGGGGGCCAGAAGATAAAGGGGACTGTGGTGTTGATGCCCAAGAATGTATTGGACTTCAACGCCATAACCTCGCTTACAAAAGCCAGTGTTGTTGACACTGCCACCAATATCTTTGGCACTGCCACCAGCATAGCTGGTGGATTCATTGATGCTGCAACTTCCTTCTTAGGCCGTAGTGTCTCCATACAATTGATCAGTGCCACTAAGACTGATGTTGGTGGAAATGGGAAAATAGGAAAAGAAGCGTATTTAGAGAAACATCTTCCGACCTTACCAACGTTGGGAGCAAGACAAGATGCATTCAGTATTTACTTTGAATGGGATGCTAATTTTGGAATTCCAGGAGCAATTTACATAAAAAACTTTATGACCGATGAGTTTTTCCTGGTGAGTGTGACTCTAGAGGACATTCCAAACCATGGGACCATTCACTTTGTTTGCAACTCATGGGTCTATAACTTCAGGTGTTACGAAAAGGATCGTATCTTCTTTGTGAATAATACATATCTTCCAAGTGCGACGCCTGGTCCATTAGTTAAGTACAGAGAAGAAGAATTGGAAAATTTAAGAGGAGATGGAACAGGGAGACGCAAGGACTATGACAGGATCTATGATTATGATGTGTATAACGATTTGGGCAATCCAGATGCTGGTGATCCTCGCCCTATCCTTGGTGCTTCTACCATCCATCCTTACCCTCGCAGGGTTAGAACCGGTAGAAATCGAACCAGGACAGATCCCAACAGTGAGGAACCAGGCCAGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTAAAGTCATCAGATTTCCTTATGTATGGACTAAAATCCTTATCTCAAGACGTCATACCTTTGTTCAAATCTATCATTTTTGACTTAAGCATCACAAAGAGTGAGTTTGATAGCTTCGATGATGTGCGTAGTCTCTATTATGGTGGAATTAAGCTACCAACAGATATAATAAGCCAAATTAGCCCCTTACCTGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATGTCCTTCAATTTCCACCACCTCATGTAATTCAAGTTAGTAAATCTGCATGGATGACTGATGATGAATTTGCAAGAGAGGTGATTGCTGGTGTAAATCCAAATGTTGTTCGTCGTCTTCAAGAGTTTCCACCGAAAAGCGCGCTTGATCCCACACTCTATGGTGATCAAACTAGTACTATAACAAAAGAACAGTTGGAGATTAACATGGGTGGGGTCACAGTAGAGGAGGCATTTAGTGCTAACAGATTGTTCATATTAGATTATCATGATGCTTTCATCCCATATTTGACGAGGATAAACAGTCTACCTACTGCAAGAGCTTATGCCACCAGAACAATCCTGTTCTTGAAAGAGGATGGATCTCTAAAGCCACTAGCTATTGAATTAAGCAAAACACATCCAGATGGAGATCATTTGGGACCTGAGAGTAAGGTGGTGTTGCCTGCAGTTGACGGTGTTGAAAGTACAATTTGGCTACTCGCCAAGGCACATGTAACTGTAAATGACTCTGGTTATCATCAGCTCATGAGTCATTGGTTAAATACTCATGCAGTCATGGAGCCATTTGCCATATCAACAAACAGAAATCTAAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCCCACTACCGTGACACCATAAATATCAATGGACTTGCAAGGCAGGCCCTAATTAATGCAGATGGCATCATAGAGAAATCATTTTTGCCCGCAAAGTACTCTCTTGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCCCTGACCAAGCGTTACCTGCAGATCTCATCAAGAGAGGATTGGCCGTTGAGGATCCCTCTGCCCCCCATGGCCTTCGCCTTCTAATAGAGGACTACCCTTATGCCGTTGATGGACTGGAAATATGGGATGTTATTAAGACATGGGTCAAACAGTATGTTTCGTTGTACTACCCAACAGATGTGGCAGTTCAACAAGATACTGAACTCCAAACATGGTGGCAGGAAGTTGTGGAGAAGGGTCATGCAGACTTAAAAGATAAGCCTTGGTGGCCTGACATGCAAAGTGTTGAAGAGCTTATCCAATCATGTTCTATCATTATATGGACAGCTTCAGCTCTCCATGCAGCAGTTAATTTTGGACAATACCCTTATGGAGGTTATATCCTAAACCGTCCAACTCTCAGCAGAAGGTTTATCCCAGAACCAGGAACCATAGAATACGATGAAATGGTGAAGAGCCCTCAAAAAGCTTATTTGAGAACAATCACACCTAAGTTTGAGACTCTTATTGACCTTTCAGTGATAGAGATATTGTCTAGGCATGCTTCTGATGAGATCTACCTTGGAGAGAGGGATACTCCAAACTGGACTACTGATACAAGGGCATTGGAAGCTTTCAAAAAGTTTGGAAGCAAACTAGCTGAAGTTGAGGGGAAAATCACAGCAAGGAACAATGATCCAAGTTTGAGAAACCGACATGGACCGGTTCAACTGCCGTACACATTGCTCCATCGTGCAAGTGAGGAAGGGTTGACTTTCAAAGGAATTCCCAATAGTATCTCTATCTAAAAGGAGTGTGCAACGTGTGGTTTCTTACCTATGTTGTAATTCTCAATAAAATAGACTATATGCTTGTCTATTTGTAATTTGTGTCTACATCACTGTATTTGGATGTTCTATGTTTGCATTTAATAAAGGACTGTTTTCACTATCTCTTCATGTTTACTTCATCTTATATATATAGGTACTAATAATGTGG | 2916 | 0.4136 | MFGILGGGGQKIKGTVVLMPKNVLDFNAITSLTKASVVDTATNIFGTATSIAGGFIDAATSFLGRSVSIQLISATKTDVGGNGKIGKEAYLEKHLPTLPTLGARQDAFSIYFEWDANFGIPGAIYIKNFMTDEFFLVSVTLEDIPNHGTIHFVCNSWVYNFRCYEKDRIFFVNNTYLPSATPGPLVKYREEELENLRGDGTGRRKDYDRIYDYDVYNDLGNPDAGDPRPILGASTIHPYPRRVRTGRNRTRTDPNSEEPGQIYVPRDENFGHLKSSDFLMYGLKSLSQDVIPLFKSIIFDLSITKSEFDSFDDVRSLYYGGIKLPTDIISQISPLPALKEIFRTDGENVLQFPPPHVIQVSKSAWMTDDEFAREVIAGVNPNVVRRLQEFPPKSALDPTLYGDQTSTITKEQLEINMGGVTVEEAFSANRLFILDYHDAFIPYLTRINSLPTARAYATRTILFLKEDGSLKPLAIELSKTHPDGDHLGPESKVVLPAVDGVESTIWLLAKAHVTVNDSGYHQLMSHWLNTHAVMEPFAISTNRNLSVLHPIYKLLYPHYRDTININGLARQALINADGIIEKSFLPAKYSLEMSSAVYKNWVFPDQALPADLIKRGLAVEDPSAPHGLRLLIEDYPYAVDGLEIWDVIKTWVKQYVSLYYPTDVAVQQDTELQTWWQEVVEKGHADLKDKPWWPDMQSVEELIQSCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRFIPEPGTIEYDEMVKSPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERDTPNWTTDTRALEAFKKFGSKLAEVEGKITARNNDPSLRNRHGPVQLPYTLLHRASEEGLTFKGIPNSISI | 865 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste6g01108 | 865 | PANTHER | LIPOXYGENASE | 9 | 865 | IPR000907 | GO:0016702|GO:0034440|GO:0046872 | |
| Pste6g01108 | 865 | ProSitePatterns | Lipoxygenases iron-binding region signature 1. | 521 | 535 | IPR020833 | GO:0016702|GO:0046872 | |
| Pste6g01108 | 865 | SUPERFAMILY | Lipase/lipooxygenase domain (PLAT/LH2 domain) | 9 | 176 | IPR036392 | GO:0005515 | |
| Pste6g01108 | 865 | ProSitePatterns | Lipoxygenases iron-binding region signature 2. | 548 | 558 | IPR020834 | GO:0016702|GO:0046872 | |
| Pste6g01108 | 865 | PRINTS | Lipoxygenase signature | 521 | 538 | IPR013819 | GO:0016702|GO:0046872 | |
| Pste6g01108 | 865 | PRINTS | Lipoxygenase signature | 541 | 561 | IPR013819 | GO:0016702|GO:0046872 | |
| Pste6g01108 | 865 | PRINTS | Lipoxygenase signature | 503 | 520 | IPR013819 | GO:0016702|GO:0046872 | |
| Pste6g01108 | 865 | FunFam | Lipoxygenase | 500 | 864 | - | - | |
| Pste6g01108 | 865 | SMART | LH2_4 | 10 | 173 | IPR001024 | GO:0005515 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 168 | 189 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 142 | 160 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 207 | 223 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 778 | 792 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 350 | 366 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 456 | 480 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 389 | 408 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 305 | 326 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | PRINTS | Plant lipoxygenase signature | 238 | 257 | IPR001246 | GO:0016491 | |
| Pste6g01108 | 865 | ProSiteProfiles | PLAT domain profile. | 45 | 172 | IPR001024 | GO:0005515 | |
| Pste6g01108 | 865 | Gene3D | PLAT/LH2 domain | 2 | 176 | - | - | |
| Pste6g01108 | 865 | CDD | PLAT_LH2 | 11 | 173 | IPR042057 | - | |
| Pste6g01108 | 865 | Gene3D | - | 177 | 273 | - | - | |
| Pste6g01108 | 865 | Gene3D | - | 363 | 498 | - | - | |
| Pste6g01108 | 865 | SUPERFAMILY | Lipoxigenase | 177 | 865 | IPR036226 | - | |
| Pste6g01108 | 865 | ProSiteProfiles | Lipoxygenase iron-binding catalytic domain profile. | 175 | 865 | IPR013819 | GO:0016702|GO:0046872 | |
| Pste6g01108 | 865 | Gene3D | - | 274 | 362 | IPR027433 | - | |
| Pste6g01108 | 865 | Gene3D | - | 499 | 864 | - | - | |
| Pste6g01108 | 865 | Pfam | Lipoxygenase | 185 | 847 | IPR013819 | GO:0016702|GO:0046872 | |
| Pste6g01108 | 865 | Pfam | PLAT/LH2 domain | 73 | 171 | IPR001024 | GO:0005515 | |
| Pste6g01108 | 865 | FunFam | Lipoxygenase | 364 | 498 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste6g01108 | Pste-Chr6 | 4579837 | 4584652 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste6g01108 | 1 | 865 | Acyl Lipid Metabolism Gene Families | AT1G55020 | 54.566 | 0.0 | 983 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste3g01581 | 3 | 9919345 | 9929185 | Pste6g01108 | 6 | 4579837 | 4584652 | PCT |