Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01002 CTTCACACAAAGTATCTTAATCCGGAGAAAATATTATCACTGTCTCTCCCTCTTTTTTCCCCTTTCACACCGTTTTCTCTTTAATCATTCTGCTAAAAGGAGGAGACTTGAGCAGAGAACAGAAGCATAGAATAAAGTGTGCAGGGCCACTGCTTTACCAAGCTGAGGAACAACACAAGGGTGGTGTTGTTTACTATTTTATTATTATTCATTGTTTGTTGTCATGAGCTTCAACAAGCTCACAGTGTGGAATGTGCCACTACTGTTGTTGTTTGTGCTGTTTGCATGTTCACTGATTGGTCATGCTTCAGCTTCTGTGTCTTATGACCATAATGCTATCACCATCAATGGACAAAGAAGGATACTGCTTTCTGGCTCCATTCACTACCCCAGAAGCACACCCGAGATGTGGCCAGATCTTATTCAGAAGGCGAAGGAAGGAGGTTTGGATGTGATTCAAACTTATGTTTTCTGGAATGGACATGAACCTTCTCCTGGCAAATATTATTTTGGGGGAAACTATGATCTGGTGAGGTTCATAAAGCTGGTGCAGCAAGCAGGCCTCTATGTTAACCTCAGAATTGGTCCTTATGTTTGCGCAGAATGGAACTTCGGAGGTTTCCCTGTTTGGCTCAAGTACATTTCAGGTATCAGCTTCAGGACAGACAACGAGCCGTTCAAGTTCCAAATGGAAAAATTTACCAAGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAGGGTGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGGCCTATGGAGTATGAAATTGGTGCTCCTGGTAGAGCCTACACTCAATGGGCAGCGCGTATGGCTGTAGGACTTGGCACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATCAACACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCTAATAAGCCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTCACTGAGTTTGGAGGTGCAGTTCCTCAGAGACCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTATATGTATCATGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCCACAAGCTACGATTATGATGCGCCTCTTGATGAGTACGGACTGCCCAGACAGCCAAAATGGGGTCATCTGAAGGATTTACATAGAGCAATAAAACTCTCTGAACCTGCTTTAGTATCTGGAGATCCTACTGTACAACGGCTTGGAAACTATGAAGAGGCTCATGTCTTTAGATCAAAGTCTGGAGCTTGTGCAGCGTTCCTTGCCAACTACAACCCACAATCTTATGCAACAGTAGCATTTGGAAATCAGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCGAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAATGATGAAGATGACCCGTGTTCCTATTCATGGAGGTCTATCTTGGAAAGCCTTTAATGAAGAGACAACCACTACTGATGATAGTTCATTCACGGTGACTGGCCTGTTGGAGCAGATTAATGCAACTAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTGATCAATTCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGTTCTCACCGTTTTGTCTGCTGGGCATGCTTTGCATGTTTTCATCAACAATCAGCTGTCAGGAACTGTATATGGAAGCTTAGAGGCCCCCAAACTAACCTTTAGTGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCCCTTCTGAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTCCTCGGCCCAATTACATTAAGTGGTCTCAATGAGGGGAGAAGGGACTTAACTTGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTTCATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGGTATTTAGTTTCCAGAAGACAGCCGCTGACTTGGTACAAAACTACCTTCGATGCTCCTGTTGGAGTTGCACCACTGGCTTTAGACATGGGCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGTCAAAGTCTGGGCCGCTACTGGCCTGCTTACAAAGCATCCGGTTCTTGTGATTACTGTAATTATGCAGGAACTTATCATGAGAAGAAATGTGGAACTAACTGTGGCGAGGCTTCTCAACGATGGTATCATGTTCCTCGCTCATGGCTGAAGCCAACTGGAAATCTATTAGTTGTGTTTGAGGAATTGGGTGGGGATCCAAACGGGATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGTGCTGATATTTATGAGTGGCAGCCAAATCTCGTAAGTTATCAGATGCAAGCTTCTGGCAAAGTCAGAAGTCCTCTGAGACCAAAAGCACATTTGTCATGTGGTCCTGGACAAAAAATCTCGTCAATCAAGTTTGCTAGCTTTGGCACTCCAGTAGGGTCTTGTGGAAACTACCGTGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCTTTCCAAAAGAATTGTATTGGACAGAGCTGGTGCACAGTGACTGTGTCTCCTGAAATTTTTGGAGGAGATCCATGTCCAAGTGTCATGAAGAAGCTCTCGGTAGAGGCTATATGCACCTGATCATTTTCCACCTCTGAAAATAAGTGGAATGAAGATTCCATATTGATTTATTCAAGCTAAGTTTACACTTGTAAATCATCACATGCATTAATTTGGCTTTACCAAGGTGAAGTTGCAGATGAACACAACACACCATCTGGTTGAAAGCCTCCTGGAATGATTGTGGATTTGTGTGTATATATTGGTGTTGTGCTTGTCATACTGAGGTGAAAGAAGGTGAAAAGTTAGCTGAAGCACATTGAGACGACATCCATCGAGTCCATGTGCAAATTGGTTTTTGTTTGTGAGGAAGTCTCTTGCTTCCTTAATGTTATAATATTACCTTGTAGCTGTAAGGAGAAAGCAATTTAGTACTTTCTGATAAGAAAACTGGCGAATGTAATAAGATCATGCTTGTTAATTCCCTTATGTTTTGCTTTTACTTCATTTCTATTATTGTTTTGAGAAAGTGTTACTAATATATTTTTCTATTCTTACCTG 3241 0.4236 MSFNKLTVWNVPLLLLFVLFACSLIGHASASVSYDHNAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYISGISFRTDNEPFKFQMEKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRAYTQWAARMAVGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKPYKPKMWTEAWTGWFTEFGGAVPQRPAEDLAFSIARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPRQPKWGHLKDLHRAIKLSEPALVSGDPTVQRLGNYEEAHVFRSKSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTMMKMTRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINSNEGFLRNGKNPVLTVLSAGHALHVFINNQLSGTVYGSLEAPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPVGVAPLALDMGSMGKGQVWINGQSLGRYWPAYKASGSCDYCNYAGTYHEKKCGTNCGEASQRWYHVPRSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYQMQASGKVRSPLRPKAHLSCGPGQKISSIKFASFGTPVGSCGNYREGSCHAHKSYDAFQKNCIGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAICT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01002 845 FunFam Beta-galactosidase 450 587 - -
Pste6g01002 845 FunFam Beta-galactosidase 595 736 - -
Pste6g01002 845 FunFam Beta-galactosidase 27 347 - -
Pste6g01002 845 CDD Gal_Rha_Lectin_BGal 762 844 - -
Pste6g01002 845 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
Pste6g01002 845 SUPERFAMILY (Trans)glycosidases 31 347 IPR017853 -
Pste6g01002 845 Pfam Galactose binding lectin domain 767 844 IPR000922 GO:0030246
Pste6g01002 845 Pfam Beta-sandwich domain in beta galactosidase 351 422 IPR041392 -
Pste6g01002 845 SUPERFAMILY Galactose-binding domain-like 406 577 IPR008979 -
Pste6g01002 845 PANTHER BETA-GALACTOSIDASE RELATED 24 746 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 SUPERFAMILY Galactose-binding domain-like 586 753 IPR008979 -
Pste6g01002 845 Gene3D Glycosidases 26 348 - -
Pste6g01002 845 FunFam Beta-galactosidase 755 845 - -
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 254 269 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 649 665 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 291 306 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 622 636 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 PRINTS Glycosyl hydrolase family 35 signature 311 327 IPR001944 GO:0004553|GO:0005975
Pste6g01002 845 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Pste6g01002 845 Gene3D - 607 736 - -
Pste6g01002 845 FunFam Beta-galactosidase 296 424 - -
Pste6g01002 845 ProSiteProfiles SUEL-type lectin domain profile. 759 845 IPR000922 GO:0030246
Pste6g01002 845 Pfam Glycosyl hydrolases family 35 39 343 IPR031330 -
Pste6g01002 845 Gene3D - 756 845 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01002 Pste-Chr6 4033094 4039407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01002 4 845 Glycoside Hydrolase AT3G13750 79.335 0.0 1422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01002 6 4033094 4039407 Pste6g01002 6 4033094 4039407 ECH
Pste3g03555 3 27955309 27964684 Pste6g01002 6 4033094 4039407 PCT