Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00575 GTGATTATTGTTGACACATAATGCAAAATGCCTGAGACAGCTACTACACCAGCAGATTGGTCATCTACAAGTTTATTTGAGCTTCTAACCGAAATGAAGAAGCAAGCGTATCCAGACTCACTCACCTTCCAAGCAAAATCTCCCTCAGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGATTACTTCGTGAAGACACTTTCTGGTATCAAGGCCAAAGGTGTTCGTGCAGACCTTATTGGCTCCATCATCACACACTACGCCTCCAAATGGCTCCCTGACCTCTCTGCGGGGGAAGGTGACGTTGACATTGACATGGCGCAAAAGGGTCTGACCCAATTTGAGGAATCGCCGGAGAGCGTGACGGCTTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTGCTGCCTCCTGAGAAGGATGCCATTCCATGCAACTTCCTTCTGCGACTTCTAAGAACAGCCAACATGGTAGGGGTTGAGGGTAGCTATAGGCAAGAGCTTGAGAACCGCATTTCCTGGCAGTTGGACCAGGCTTCGTTGAAGGAGTTGCTCATTCCCTCTTTCAGCCACACTTGTGGAACTCTATTGGATGGTGACCTCCTCATTAGGCTTGTTAAGAGGTTTGTCAGTTTGGACGCTAAGAGCGTTGCTTCTTTGGTTAAAGTGGCCAAGTTGGTTGATTCCTACCTCGCTGAGGCTGCTCTCGATTCCAATTTCACCTTGTCCGACTTCGTTACCCTTGCCTCCGCTCTTCCATCCCATGCAAGAGCTACCCATGATGGCTTGTACAGAGCCATTGATACCTATCTTAAAGCACATCCAGGGGTGTCAAAGGAAGAAAGGAAGGGTGTATGCAGGCTGATTGACAGCAGAAAATTAACTCCAGAGGCCTCACTGCACGCAGCACAGAACGAGAGGTTCCCAGTGAGAGCAGTGATTCAGGTGCTAATGAGTGAGCAGAGCAAGGTGAACCGGCACGGCGGGGATTGGAGCGGTTCATTGGTGAGTGCAACAAGGAGCCCTGGGGAGTTGGACTTACCCACACGGTGTCTGTCAAAGCGTGAGGTGAATGTTCAACAACTTGAGATAAGGAAGCTGAAGGAAGACTTGTACAGGCTGCAAAGCCAGTGCAATGCCATGCAAGCCCAAATGGAGAGAATGGTGGAGAAGAAGAAGGGCTTTTTCAAGTGGAAGAGCAAGTTTCCCTTTGGCAAAGCTGACCATCACAATCACAAAATGGAATACCACCTTGAACTTGAAGGGAATGGAAATGGAATGTACACGCCCGCAGACATCAAAACCAGGTTGGTCCACGTCAACAATCACAAGTGGAGGAAATCCATGTCATGACTTTTATCAACTCATACCTTCTTATATTCACCAATTTAATCTATTGCTTGTATCAGACAATGGAAGATAGATCGCCTTTTGTATTTCCAATAAACTCAATAAGGATACGAGTGTGCCATACTTGATGCCACTCACACTGCCAATGTCATTGTAG 1519 0.4773 MPETATTPADWSSTSLFELLTEMKKQAYPDSLTFQAKSPSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGEGDVDIDMAQKGLTQFEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEGSYRQELENRISWQLDQASLKELLIPSFSHTCGTLLDGDLLIRLVKRFVSLDAKSVASLVKVAKLVDSYLAEAALDSNFTLSDFVTLASALPSHARATHDGLYRAIDTYLKAHPGVSKEERKGVCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLMSEQSKVNRHGGDWSGSLVSATRSPGELDLPTRCLSKREVNVQQLEIRKLKEDLYRLQSQCNAMQAQMERMVEKKKGFFKWKSKFPFGKADHHNHKMEYHLELEGNGNGMYTPADIKTRLVHVNNHKWRKSMS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00575 445 PANTHER OS12G0117600 PROTEIN 30 392 IPR043454 -
Pste6g00575 445 Pfam NPH3 family 42 294 IPR027356 -
Pste6g00575 445 ProSiteProfiles NPH3 domain profile. 41 318 IPR027356 -
Pste6g00575 445 Coils Coil 352 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00575 Pste-Chr6 2167832 2169822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00575 38 316 EF-hand Containing Proteins AT3G44820 36.213 6.12e-51 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00575 6 2167832 2169822 Pste6g00575 6 2167832 2169822 ECH
Pste3g03696 3 29202626 29204887 Pste6g00575 6 2167832 2169822 PCT