Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00450 ATGTCGTCTCTCAGTAGGGAATTGGTGTTCTTGATCTTACAGTTTCTAGATGAGGAAAAGTTCAAGGAGACTGTGCACAAGCTTGAGCAGGAGTCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGGAATTGGGATGAGGTGGAAAAATACCTCTCTGGTTTCACAAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAATTGTTCAAGGAAATCACACAGCTACTGACATTGGAAAATTTTAGGGAAAATGAACAATTGTCGAAGTATGGTGATACCAAGTCCGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAACCCCTTATTCCGTGACAAATTACAATTTCCCAACCTTAAGAACTCCAGGTTACGGACTCTGATCAATCAAAGCTTAAATTGGCAGCATCAACTTTGCAAGAATCCACGCCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGCGCTCCGTCACCTGCTAACAACCCGCTACTAGGCTCCTTACCAAAGGCTGGAGGATTTCCTCCGCTTGGTGCACATGGGCCATTTCAGCCTACTCCAGCACCAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACAACTGTAGCACATGCTGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCAATCCCTGCTGCTTTGAAGCATCCTAGGACCCCTCCAACTAATCCTTCTGTTGACTATCCGTCTGGAGATTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATTTCAGATGAGGTGAATCTACCTGTCAATGTGTTGTCAGCAACATTCCCAGGTCATGGTCAACATGGTCAAGCTTTTAATGCACCAGATGATATACCTAAGACTGTTGTGCGGACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCCGGTGTTTCTGTCAATCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCCAGGCATATTGTTCAGATATACTCTTACCATGGAGGGGATGAAATACGACAGCACCTAGAGATTGATGCTCATGTTGGTGGTGTAAATGATCTGGCATTTTCTCACCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAGACCATTAAGGTATGGGATGCGGCGTCAGGAGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGATAATTTGGGATCTCGTGTTGACTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGAACAAGCAAAGATGGAGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTTAAAAGGACTTATCAAGGATTTCGTAAGCGTTCTTTGGGTGTTGTGCAATTTGATACTACCAAAAATCGCTTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAACTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGAATTCGTTTCAACAAGGAAGGAACCCTTTTAGCCGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGCGATGGTATTCGTTTGTTGCGCACACTTGAGAATTCTTTATATGATGCATCAAGAGCATCAGAATCCTTGGCAAAGCCTGCAATTAATCCAATTTCTGCTGCTGCTGCTGCTGCTGCAACTAGTGCTGCACTGGCAGAGAGGGCTTCGTCTGTAGTGGCTATTGCTGGAATGAATGGGGATACCCGAAATATGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTGCCGGAGAATGTAAGAGTAACTAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCCATTCTGGCATTAGCATCAAATGCTATTCACCTTCTCTGGAAATGGCAGCGAAATGAGCGTAATTCATCTGGCAAGGCCACTGCTACCTTACAACCTCAGTTGTGGCAACCATCGAGTGGTATCCTGATGACAAATGACATTGCTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCATTGTCCAAAAATGACTCGTATGTTATGTCTGCATCAGGAGGGAAAATTTCTCTGTTCAATATGATGACTTTTAAGACTATGACAACCTTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAAATTTACAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACCAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCAGGAGCAGATGCTCAGATTTGTGTTTGGAACACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGGAGAACACCTCCAGCACAGTCAGATACTCGTGTACAGTTTCATCAAGATCAACTCCAGTTCTTGGTTGTACATGAAACTCAACTCGCCATTTACGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTTCCCGCGAGACTCGTCTGCACCAATATCTCATGCAACTTTTTCATGTGATAGCCAGCTGGTGTATGCCAGCTTTTTAGATGCAACAGTATGTGTATTTAGTGCTTCGAACCTCAGATTACGTTGTCGTATCAATCCTTCTGCATATCTTCCCGCAAGCGTCAGTTCCAACATACAGCCACTTGTAATTGCCGCACATCCACAAGAAGCAAATCAGTTTGCTGTAGGACTGTCGGATGGTGGAGTTCATGTTTTTGAACCCCTTGAATCTGAAGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGGTCAGCAAGCAATGTGGCAGCCACTTCAGTTGGACCTTCGTCAGATCAAGCTCAAAGATGATCCCTGTCAGCGGAAGACAAGTTTCTTTTACATACTTGGCTTGCTGGCCAATTTAAGAACTAAAATTTGTACTTAAGTTAATGCAGGGAACTCTCCAATTCGTTGATCCAACTAGGTTAAATCCATCGATCTTACTGTTCACAATCACATCATGCCAGAGCTCTGGAGCAACTCATTTTGGTTGAAGGCCAAAACCACATTGTAATTTGCCAATAGATGTGAAAAATTCTTTTTAAGTTTAATGCTACAGATGATGTACAAGTTCTTTAGTACTTTCAAACTGCTTCTGGCTATTTAATTAGATTGGTTGATCCTAACTTGTGTTGCCTTTTTGTTAGTACCATTCCAGTCTTGTATGTAACTTGCTGTGCTATTCTAGTCTTCATCGTTCGCAAATCTTACACATAATTTTCCC 3823 0.4224 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHGQAFNAPDDIPKTVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKEGTLLAVSANENGIKILANGDGIRLLRTLENSLYDASRASESLAKPAINPISAAAAAAATSAALAERASSVVAIAGMNGDTRNMGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQLQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISHATFSCDSQLVYASFLDATVCVFSASNLRLRCRINPSAYLPASVSSNIQPLVIAAHPQEANQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00450 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Pste6g00450 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 963 IPR001680 GO:0005515
Pste6g00450 1135 FunFam Topless-related protein 1 324 543 - -
Pste6g00450 1135 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1117 IPR027728 GO:0006355
Pste6g00450 1135 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Pste6g00450 1135 Pfam WD domain, G-beta repeat 921 954 IPR001680 GO:0005515
Pste6g00450 1135 SMART Lish 4 36 IPR006594 GO:0005515
Pste6g00450 1135 Gene3D - 548 688 IPR015943 GO:0005515
Pste6g00450 1135 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pste6g00450 1135 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Pste6g00450 1135 MobiDBLite consensus disorder prediction 285 304 - -
Pste6g00450 1135 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 780 1101 IPR011047 -
Pste6g00450 1135 SUPERFAMILY WD40 repeat-like 346 445 IPR036322 GO:0005515
Pste6g00450 1135 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pste6g00450 1135 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 419 971 IPR011047 -
Pste6g00450 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Pste6g00450 1135 Gene3D - 320 547 IPR015943 GO:0005515
Pste6g00450 1135 MobiDBLite consensus disorder prediction 1106 1135 - -
Pste6g00450 1135 Gene3D - 775 1107 IPR015943 GO:0005515
Pste6g00450 1135 SMART ctlh 34 92 IPR006595 -
Pste6g00450 1135 FunFam Topless-related protein 3 741 975 - -
Pste6g00450 1135 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 954 - -
Pste6g00450 1135 MobiDBLite consensus disorder prediction 1117 1135 - -
Pste6g00450 1135 SMART WD40_4 585 625 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 1007 1047 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 345 384 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 495 536 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 406 445 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 915 954 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 872 912 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 832 869 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 451 492 IPR001680 GO:0005515
Pste6g00450 1135 SMART WD40_4 539 582 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00450 Pste-Chr6 1692227 1699602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00450 456 632 Miscellaneous Gene Families AT5G08390 23.889 9.05e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00450 6 1692227 1699602 Pste3g03757 3 29741486 29749309 ECH
Pste6g00450 6 1692227 1699602 Pste6g00450 6 1692227 1699602 ECH
Pste6g00450 6 1692227 1699602 Pste3g03757 3 29741486 29749309 PCT