Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03757 ATGTCATCTCTGAGTAGGGAGTTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAATTCAAAGAAACTGTTCACAAGCTTGAGCAGGAGTCTGGCTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTTGAGAAGTACCTCTCTGGTTTCACCAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTACCTGGAGGCATTAGATAAGCATGATCGGTCCAAGGCTGTAGAAATACTAGTGAAGGATTTGAAAGTCTTTGCCACATTTAATGAAGAGCTATTTAAGGAAATCACACAACTTTTGACATTGGAGAATTTTAGGGAAAATGAACAATTGTCCAAGTATGGTGATACTAAGTCTGCAAGGGCTATCATGTTGGTTGAGCTCAAAAAGTTGATTGAAGCCAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAATTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGTAAGAATCCACGGCCAAATCCAGATATAAAAACTCTTTTTGTGGATCACTCATGTGGACAGCCAAATGGAGCAAGGGCTCCATCACCTGCTAATAATCCGCTACTAGGATCATTACCAAAGGCTGGAGGATTTCCTCCTCTTGGTGCACATGGGCCTTTTCAACCAACTCCAGCCCCTATGCCAACACCCCTGGCTGGTTGGATGTCAAATCCAACCACTATAGCACACCCTGCAGTTTCTGGAGGAGCTATAGGTCTTGGTGCACCATCCATCCCTGCTGCTTTGAAGCACCCTAGGACCCCCCCAACTAATCCTTCTGCTGACTATCCATCTGGTGATTCAGATCATGTTTCTAAGAGAACAAGACCAATGGGAATATCAGATGAGGTAAATCTGCCTGTCAATGTTTTGTCAGCAACATTCCCTGGTCATGGTCATGGTCATGGTCAGGCTTTTAATGCACCTGATGACTTGCCAAAGACTGTCATGCGAACTCTGAACCAAGGCTCGTCACCTATGAGCATGGACTTTCATCCAGTTCAACAAACACTGCTTCTTGTTGGTACAAATGTGGGGGACATTGCTCTGTGGGAAGTGGGCTCTAGGGAGCGGTTACTCATGAGGAACTTTAAAGTTTGGGATCTTAGTGCTTGTTCAATGCCCTTTCAGGCTGCACTTGTCAAAGATCCAGGGGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGGGCTTTGTTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGCGGGGATGATGTTCGACAGCATCTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATTTGGCATTTTCGCACCCAAATAAGCAACTATGTGTCATAACCTGTGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTACGGGTGCAAAACAGTATACTTTTGAAGGTCATGAAGCTCCAGTTTATTCCGTCTGTCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACGGCATTAGATGGAAAGATAAAAGCATGGTTATATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGACGTTGGTGTACAACCATGGCTTATAGTGCTGATGGTACAAGACTCTTTTCATGTGGTACAAGTAAGGATGGGGAGTCCTCTATTGTCGAGTGGAATGAAAGTGAAGGAGCAGTGAAGAGGACTTATCAAGGATTTCGGAAACGATCTTTGGGAGTTGTACAATTTGATACAACCAAAAATCGATATTTGGCCGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAACATTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCGAGCCCACGGATCCGTTTTAACAAGGATGGAGTTCTTTTAGCTATTTCTGCAACTGAGAATGGAATTAAAATCTTAGCCAATGCAGATGGTATTCGGTTGTTACGTACATTAGAGAATTCTTTATATGAAGCATCAAGAACAGCAGAAGCCATGACAAAGCCTAATCCAATTTCAGCTGCTGCCACTGCTGCAACTAGTGCTGCATTTGCAGAGAGGGCCTCTTCTGCGGTAACTATTACTGGAATGAATGGGGATGCACGGAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGATAAGTCAAAGATATGGAAGCTCACTGAGATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCTGAGAATGTAAGAGTGAACAAGCCTACTTTGGTCTTGTGGTTCTCTGTAGCAAAACTTTGGTCTTGCAATAGGACTTCCTCCAACCCATCAAAGTCATGGGTTCTATTCATGTGTCCTTTATTTCTTTATGCTGTTGAGTACTACTATTTAAGACCCCCCTTGAATTTCCTGCTTATATCAAGGTTGATATATACTAATTCAGGGAATGCTATTCTGGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAGTGACCGTAATTCAACTGGCAAGGCCACTGCCAGTGTGCTACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGATCCCTGTTTTGCTCTGTCGAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCTCTGTTCAATATGATGACTTTCAAGACAATGACAACATTCATGCCTCCACCACCTGCAGCAACTTTTCTTGCTTTCCATCCTCAGGATAACAATGTTATTGCTATAGGCATGGATGATTCTTCCATTCAAATATATAATGTCCGTGTAGATGAGGTTAAAAGTAAACTCAAAGGCCATATGAAAAGAATAACTGGTCTTGCTTTTTCTCATGTATTGAATGTGCTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGACGGATGGGAAAAGCAGAAGTCTAGATTCTTACAACTTCCTGCTGGGAGGACTCCATCAGCACAGGCAGATACCCGTGTACAATTTCATCAGGATCAGATCCGCTTCTTGGTTGTACATGAAACTCAACTTGCCATTTATGAAGCTACAAAACTAGAATGTTTAAAGCAGTGGTTCCCACGAGATTCGGCTGCACCAATATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTACTTCAAACCTTAGATTACGTTGTCGAATCAATTCTTCTGTTTATCTTTCTGCGGGTGTCAGCAGTTCTAACGTACAACCACTGGTAATTGCTGCACATCCTCAAGAACCAAATCAGTTTGCTGTAGGGTTGTCGGATGGTGGAGTTCATGTCTTTGAGCCCCTTGAGTCTGAAGGCAAATGGGGTGTGCCTCCGCCCATTGAGAACGGGTCTACGAGCAATATGGCAGCTACTTCAGTTGGAGCTTCTTCTGATGAAGCTCAGAGATGATCCATGTCAGCCAAAGACAAGTTTCTTTTACATACTTGACTTGCTGGCCATTTCAAGAACTAGGTATGTACTCATGCAGGGCATTCCCGAATTAGTTTATCCAACTATTCTCTTGATCCATTGTGTTGTCTGGCCTTTGTGGACAGTCACATACCAGAACAATGGACGAACCCGAGCCCAAAACGTAAACCTTGTAACTGCCAAAATATGTGAAAATTTCGTTGAAGTTAAAGCTACAAAAGCATAAGTTCTCGATTTTAAACTTTTTTTCTGGCTATTTATTTATAGACCGATTTATCCTAACTTCTCCTTTGTAATCCCATCCATTCTACATGTAACTTGCTAGGATAATCTTCTGTCTCCATCGCTAACTATATTTATAATATTAATTTTTTAAACGGTGTA 3960 0.4189 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPMPTPLAGWMSNPTTIAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSADYPSGDSDHVSKRTRPMGISDEVNLPVNVLSATFPGHGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGVLLAISATENGIKILANADGIRLLRTLENSLYEASRTAEAMTKPNPISAAATAATSAAFAERASSAVTITGMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKPTLVLWFSVAKLWSCNRTSSNPSKSWVLFMCPLFLYAVEYYYLRPPLNFLLISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSTGKATASVLPQLWQPSSGILMTNDITDSNTEDADPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNVIAIGMDDSSIQIYNVRVDEVKSKLKGHMKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKSRFLQLPAGRTPSAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSAAPISHATFSCDSQLIYASFLDATVCVFSTSNLRLRCRINSSVYLSAGVSSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAATSVGASSDEAQR 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03757 1184 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 963 1002 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 406 445 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 585 625 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 451 492 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 1054 1095 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 1116 1148 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 920 960 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 495 536 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 345 384 IPR001680 GO:0005515
Pste3g03757 1184 SMART WD40_4 539 582 IPR001680 GO:0005515
Pste3g03757 1184 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 826 1168 IPR027728 GO:0006355
Pste3g03757 1184 SMART Lish 4 36 IPR006594 GO:0005515
Pste3g03757 1184 SUPERFAMILY WD40 repeat-like 345 537 IPR036322 GO:0005515
Pste3g03757 1184 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pste3g03757 1184 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Pste3g03757 1184 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Pste3g03757 1184 ProSiteProfiles Trp-Asp (WD) repeats profile. 970 1011 IPR001680 GO:0005515
Pste3g03757 1184 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pste3g03757 1184 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 970 1002 - -
Pste3g03757 1184 FunFam Topless-related protein 1 323 543 - -
Pste3g03757 1184 MobiDBLite consensus disorder prediction 1162 1184 - -
Pste3g03757 1184 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 471 1100 IPR011047 -
Pste3g03757 1184 Gene3D - 826 1156 IPR015943 GO:0005515
Pste3g03757 1184 Gene3D - 546 695 IPR015943 GO:0005515
Pste3g03757 1184 SMART ctlh 34 92 IPR006595 -
Pste3g03757 1184 MobiDBLite consensus disorder prediction 1152 1184 - -
Pste3g03757 1184 MobiDBLite consensus disorder prediction 279 305 - -
Pste3g03757 1184 Gene3D - 334 545 IPR015943 GO:0005515
Pste3g03757 1184 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 1030 1165 IPR011044 -
Pste3g03757 1184 MobiDBLite consensus disorder prediction 206 234 - -
Pste3g03757 1184 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Pste3g03757 1184 Pfam WD domain, G-beta repeat 969 1002 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03757 Pste-Chr3 29741486 29749309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03757 456 653 Miscellaneous Gene Families AT5G08390 23.645 2.15e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00450 6 1692227 1699602 Pste3g03757 3 29741486 29749309 ECH
Pste3g03757 3 29741486 29749309 Pste3g03757 3 29741486 29749309 ECH
Pste6g00450 6 1692227 1699602 Pste3g03757 3 29741486 29749309 PCT