Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03036 AACTCATCGAAGATAACGAGACCCATTCTCTCTCTCCTCTCTTATCCGCAGCTTTTCAAACCCTAGAAACTCTCCAACTCGGGACTCCCAGCCTCTGCAATCCTTAAGAAGTTCTAAATTTTTGAGGAATTTGAGGTTGGGGAGACTCTGCGGGTTTCATATTTGGTGTTCCAGTTCCATACTTCATCCATGATTTCTCTCTGTTTGTAGGAATTCAAGTTATGTGCTGTTTCTGTCGGCTTGATTTTCTGTTTATGTTTTTCTTTGGTGAGTTGTGTGTTTGAAGATCGGTGCTCGAAGATCGATATTATTGGCGCGTTTCAGATTTGAGGAGTAGCTATGACTTCTTTGAGCCGGGAATTAGTGTTTCTGATTCTCCGGTTTTTGGAGGAGGAGAAGTTCAAAGAGTCGGTGCACAAACTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAGAAAGTACAGGCTGGTGAATGGGAAGAAGTAGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATAAGGAAGCAGAAATATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTAGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACACAACTTTTAACACTTAGTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGATAAACTTATCTTCCCTACCCTTAGATCATCAAGATTGCGGACGTTGATCAATCAAAGTTTAAACTGGCAACACCAGCTTTGCAAAAACCCCAGGCCAAATCCAGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCTGTTGCCGCGGTTGCAAAGCCTGCTGCTTATACTTCAATTGGAGCTCATGGACCTTTTCCGCCTACCGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCGTCATCTGTCCAAGCAGCTGTTGTCACGGCATCAACCATACCTGTCCCACAAAATCAAGGCATGGCTGATTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCAGGCCTACTCCTTCTGTAGAGGAGGTTTCTTATCCTGCTGCTCGACAAGCCTCTTGGTCGCTGGATGATCTACCGAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATTACACTTTGGGAACTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCTTTCAAGATATGGGATATCTCAGTGTGCTCATTACCATTTCAGGCAGCCATGGTGAAAGATGCACCTATTTCTGTCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTATTCTGGATCAAATGAGTTGGCTCAGCGTATAGAGGTTGATGCCCATATTGGTGGTGTTAATGACTTGGCATTTGCCCATCCAAATAAACAACTCTGTATTGTGACTTGCGGAGATGATAAGTTGATAAAGGTGTGGGATATAACTGGACGGAAACTATTTAACTTTGAGGGGCACGAGGCACCTGTATATTCTATCTGTCCTCATCACAAGGAGAGCATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTGTACGATAATATTGGTTCCAGGGTTGACTATGATGCTCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGACTGTTTTCTTGCGGAACTAGTAAAGATGGGGAATCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGGTTCAGAAAGAAATCTGCAGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGATGCCCAGATAAAATTTTGGGACATGGACAATATTAATCTTCTAACAAGTACTGATGCAGAGGGAGGACTGCAGGCCCTTCCACACTTGAGATTCAACAAAGAAGGAAATCTTCTTGCTGTTACTACTTCAGACAATGGATTCAAAATTCTTGCTAATGCTAATGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCCATTGAATCTGCTGCAAATGCAATCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTCCCATCAACTGTAAAGTAGAAAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCACAGGTCGAAATGCAGAGAAACCTAGAACTGTTGAAGATGGAATAGATAGAGCTAAACCATGGCAGCTGTCTGAAATTGTGGATCTTGTCCAATGTCGGTTAGCTACCATGCCTGACAGTACGGATTCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGCCTCGTGGCGATCAAAATCCCAATGGAAAGGCAACTGCCAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATGTTGCGGGTGTCAACCTTGATGAAGCCGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTATGTCTGCATGTGGTGGAAAGGTTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCCTCTACCTTTCTTGCTTTCCACCCTCTAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACGATTCACATATATAATGTTAGAGTGGATGAGGTGAAATCCAAATTGAAGGGTCACCAAAAGCGGATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTACATCAGGAGCTGATGCTCAACTTTGTGTATGGAGCATCGATACATGGGAGAAAAGAAAATCGGTTCCCATACAACTACCTGCAGGAAAGGCTCCTGTTGGTGACACTAGAGTGCAGTTTCATTTAGACCAAATCCGGTTACTGGTAGCCCACGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGTATTCGGCAGTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTGCGATGGCAACACAGGGGTTTTTGATGCCGACAGCTTGAGATTAAGGTGCCGTATTGCACTATCCACATACTTTTCACCTGCGGCTTTAAGTGGGAACCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCACTAGAGCCCAATCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATTGAGCCTAGTGAATCGGAAGGTAAGTGGGGAACCAGTCCACCTATGGATAATGGAATATTGAACGGCAGGGCAGCATCATCATCTACAACAAGCAACCACACACCCGATCAGGTACAAAGATAAGAACATTCATTGTACCATAACCACATATTCTTTCCATCTGTAATTTCATCAACACCTTAGATTTTTAGATTTTGATTCCTCCCATTTGTCTGTCCCTAGTCAAGGTCTTGTTAGGGTCGGCTTGGGCATAGAAATGGCTAATTTAGTGTAAGCTCCTGTATACCAAAATTTGTTCAGTCAACTCGATTACATTATTTATACTGCACTATAGTGTACCTCTTCTTGCCAACAATGTGATCTGTCCATTCTCCTCACATTTGTTGTTTGAAATTTGTTAGTCATTGAGCTATTATAGATATTGCTTCCTAGGTTGAAATGATATAGCTATTGGTTATTTGTGTCATG 4038 0.424 MTSLSRELVFLILRFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFPPTAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQGMADYQNADHEQLMKRLRPTPSVEEVSYPAARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEITLWELGLRDRLVSKPFKIWDISVCSLPFQAAMVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYAYSGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDITGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNIGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDAQIKFWDMDNINLLTSTDAEGGLQALPHLRFNKEGNLLAVTTSDNGFKILANANGLRSLRTVETPGFEALRSPIESAANAIKASGSSAVNVSPINCKVERSSPVRPSPILNGVDPTGRNAEKPRTVEDGIDRAKPWQLSEIVDLVQCRLATMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWPRGDQNPNGKATASVVPQHWQPNSGLLMTNDVAGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPLDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVTSGADAQLCVWSIDTWEKRKSVPIQLPAGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPAALSGNQSVYPVVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASSSTTSNHTPDQVQR 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03036 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 609 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 321 360 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 810 846 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 514 557 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 470 511 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 560 600 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 1037 1078 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 987 1023 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 425 468 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 892 931 IPR001680 GO:0005515
Pste5g03036 1117 SMART WD40_4 849 889 IPR001680 GO:0005515
Pste5g03036 1117 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pste5g03036 1117 Gene3D - 269 523 IPR015943 GO:0005515
Pste5g03036 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 361 IPR001680 GO:0005515
Pste5g03036 1117 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1102 IPR027728 GO:0006355
Pste5g03036 1117 MobiDBLite consensus disorder prediction 693 716 - -
Pste5g03036 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 469 IPR001680 GO:0005515
Pste5g03036 1117 SUPERFAMILY WD40 repeat-like 768 1084 IPR036322 GO:0005515
Pste5g03036 1117 Gene3D - 817 1089 IPR015943 GO:0005515
Pste5g03036 1117 Pfam WD domain, G-beta repeat 434 468 IPR001680 GO:0005515
Pste5g03036 1117 Pfam WD domain, G-beta repeat 898 931 IPR001680 GO:0005515
Pste5g03036 1117 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pste5g03036 1117 SUPERFAMILY WD40 repeat-like 315 510 IPR036322 GO:0005515
Pste5g03036 1117 ProSitePatterns Trp-Asp (WD) repeats signature. 455 469 IPR019775 -
Pste5g03036 1117 SMART Lish 4 36 IPR006594 GO:0005515
Pste5g03036 1117 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 899 934 - -
Pste5g03036 1117 SMART ctlh 34 92 IPR006595 -
Pste5g03036 1117 FunFam Topless-related protein 3 718 952 - -
Pste5g03036 1117 FunFam TOPLESS-related 3 388 683 - -
Pste5g03036 1117 MobiDBLite consensus disorder prediction 1098 1117 - -
Pste5g03036 1117 MobiDBLite consensus disorder prediction 1080 1117 - -
Pste5g03036 1117 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 439 936 IPR011047 -
Pste5g03036 1117 Gene3D - 526 658 IPR015943 GO:0005515
Pste5g03036 1117 ProSiteProfiles Trp-Asp (WD) repeats profile. 899 940 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03036 Pste-Chr5 23388475 23399262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03036 321 544 Miscellaneous Gene Families AT5G08390 27.391 4.50e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03036 5 23388475 23399262 Pste5g03036 5 23388475 23399262 ECH
Pste5g03036 5 23388475 23399262 Pste4g01227 4 8988320 8996887 PCT