Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01227 ATGTCTTCTCTGAGTAGAGAATTGGTATTTCTCATACTCCAATTTCTGGAGGAAGAGAAATTCAAAGAGTCCGTACACAAGCTTGAGAAAGAATCTGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAGTGGGAAGAGGTTGAGAAGTACTTATCAGGTTTTACAAAAGTTGATGATAATAGATACTCAATGAAAATATTTTTTGAAATCAGGAAACAAAAATATCTGGAAGCACTTGATCGGCAAGATAAGGCAAAGGCCGTCGAGATATTAGTGGGTGATTTAAAAATGTTCTCCACCTTCAATGAGGAGCTGTATAAAGAAATAACCCAGCTATTAACACTTAATAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGTTGATAGAGCTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTCATATTCCCTACCCTTAAGGCATCACGACTGCGAACTTTAATCAATCAAAGCCTAAACTGGCAGCACCAGCTCTGCAAAAATCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCCAATGGTCCTCTTGCACCTACCCCTGTCAATCTTCCAATTGCTGCAGTTGCCAAGCCTGCTGCTTATACTTCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCTGCTGCTACTGCCAATGCTAATGCTTTGGCTGGTTGGATGGCCAATACCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACGATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAACGTCCTAGAACACCTCCTGCAACTCCTGGCTTGGTTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGGCTTCGTCCAGGTCATTCTGTAGAGGAGGTTTCGTATCCCTTGGCTCGACAAGCCTCTTGGTCTCTGGATGATCTACCAAGAACTGTGACTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCAAATAATGGTGAAATTACCCTCTGGGAACTCAGTTTGAGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATTTGTCTGCATGCTCACTACCGTTTCAGGCTGCTGCAGTCAAGGACGCGCCTATTTCCGTCAGTCGAGTCACATGGAGCCCTGATGGAAGTTTTGTAGGTATTGCTTTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGATCTAATCCAGCGTATAGAGGTTGATGCTCATGTTGGGGGTGTGAATGACTTGGCATTCGCTCATCCAAACAAACAGCTGTGTATTGTCACTTGTGGGGACGATAAGTTGATAAAGGTATGGGATTTAAATGGCCGAAAACTATTCAGCTTTGAGGGGCACGAGGCACCTGTATATTCCATCTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCTACTGCCATTGATGGGAAAATAAAGGCATGGTTATACGATAACATGGGTTCTAGGGTTGATTATGATGCCCCTGGGCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGGTTATTTTCTTGCGGGACAAGTAAAGACGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAAAAATCTGCTGGTGTTGTGCAGTTTGACACAACTCAGAATCGCTTTTTGGCTGCAGGTGAAGAAGGTCAAGTTAAGTTTTGGGACATGGACAATATTAATCTTCTAATAAGCACTGATGCTGATGGAGGATTACAGAGCCTTCCACGTTTGAGATTCAACAAGGAAGGAAATATTCTTGCTGTTACTACCGGAGACAATGGATTCAAGATACTTGCTAATGCTTCTGGTCTTAGATCTTTAAGAACGATTGAGACTCCAGCATTTGAAGCATTGAGGTCACCCATTGAATCAACTGCAATTAAGGTGTCTGGCTCTTCTACTGTTAATGCTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGCCGAAGTGGAGAGAAACCAAGAGCTGTGGAAGATGTAATAGATAGAGCTAAACCATGGCAACTATCTGAAATTGTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGAAAGCACAGATTCTTCCAGCAAGGTTGTGAGACTTCTATATACAAACTCTGGTGTTGGTATTTTGGCCCTTGGTTCAAATGGTATCCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCTACTGCAAATGTTGTTCCGCAACATTGGCAACCCAACAATGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCATATGTAATGTCTGCCTGCGGTGGAAAGGTTTCCCTATTTAACATGATGACTTTCAAGGTAATGACAACATTCATGCCACCACCTCCTACTTCAACCTTCCTAGCTTTCCATCCCCAGGATAACAACATAATAGCCATTGGGATGGAGGATTCAACCATTCACATTTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAAGCGTATCACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGGTGATGCTCAACTTTGTGTGTGGAGTATTGATACCTGGGAGAAAAGAAAATCAATTACAATACAACTACCTGCAGGAAAGTCACCTGTTGGTGATACACGCGTACAATTCCATTCTGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGACAGTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGTGATGCCAACATTGGTGTTTTTGATGCTGATAGCTTGAGGCTCAGATGTCGTATTGCACCGTCAATATGCTTGTCACAGGCAGCTTTAAGTGGAAGTCAGGCTGTGTATCCTCTTGCGGTTGCCGCTCATCCTCTAGAGCCTAATCAGTTTGCTGTTGGGTTGACGGATGGATCTGTCAAAGTGATAGAACCTAATGAATCAGAGGGTAAGTGGGGATCCTCCCCACCTATGGACAATGGAATACTTAATGGTAGGACGGGATCATCATCTACAACAAGCAACCACACTGCTGATCAGGCTCAAAGATAAGATCAATTGTATTATACTAGTGTAGTTATTTTCATCTGTAATTTTATCAGCTTAGATGTTTAGGTTTTCATTCACCAATATGTCTCGTCAATATCAGGTCAGCTTTGACATAAAAAATTAAAATGGTAAATGCTTAGACGTACAATCGTGTATACCTTAATTTATTCTAGTTAACTCAATTTTATTGTTTATATTTTTAGTTGTACGTAATGTTCCTGTTTCTTGCTTACCAGTGTATACGTCAATTTTCCTTGCCTTGTGGTTCGTGATTACCCGTATAAAATCAATTGTCAAGTTGTCGGC 3696 0.4186 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKMFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPPAAAATANANALAGWMANTSASSSVQAAVVTASTIPVPQNQVSILKRPRTPPATPGLVDYQNADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVSKPFKIWDLSACSLPFQAAAVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYAYTGSNDLIQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEEGQVKFWDMDNINLLISTDADGGLQSLPRLRFNKEGNILAVTTGDNGFKILANASGLRSLRTIETPAFEALRSPIESTAIKVSGSSTVNASPVNCKVERSSPVRPSPILNGVDPMGRSGEKPRAVEDVIDRAKPWQLSEIVDPVQCRSVTMPESTDSSSKVVRLLYTNSGVGILALGSNGIQKLWKWARNEQNPTGKATANVVPQHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPTSTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGGDAQLCVWSIDTWEKRKSITIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSQAALSGSQAVYPLAVAAHPLEPNQFAVGLTDGSVKVIEPNESEGKWGSSPPMDNGILNGRTGSSSTTSNHTADQAQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01227 1130 Gene3D - 408 672 IPR015943 GO:0005515
Pste4g01227 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pste4g01227 1130 Gene3D - 329 386 IPR015943 GO:0005515
Pste4g01227 1130 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 885 1094 IPR011048 -
Pste4g01227 1130 SMART WD40_4 440 483 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 336 375 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 529 572 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 398 436 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 575 615 IPR001680 GO:0005515
Pste4g01227 1130 SMART WD40_4 485 526 IPR001680 GO:0005515
Pste4g01227 1130 FunFam Topless-related protein 3 731 965 - -
Pste4g01227 1130 Gene3D - 762 1099 IPR015943 GO:0005515
Pste4g01227 1130 MobiDBLite consensus disorder prediction 702 728 - -
Pste4g01227 1130 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Pste4g01227 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Pste4g01227 1130 MobiDBLite consensus disorder prediction 1107 1130 - -
Pste4g01227 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Pste4g01227 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 384 IPR001680 GO:0005515
Pste4g01227 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Pste4g01227 1130 SMART ctlh 34 92 IPR006595 -
Pste4g01227 1130 MobiDBLite consensus disorder prediction 1092 1130 - -
Pste4g01227 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Pste4g01227 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pste4g01227 1130 SMART Lish 4 36 IPR006594 GO:0005515
Pste4g01227 1130 FunFam TOPLESS-related 3 403 698 - -
Pste4g01227 1130 SUPERFAMILY WD40 repeat-like 330 525 IPR036322 GO:0005515
Pste4g01227 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 454 949 IPR011047 -
Pste4g01227 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1112 IPR027728 GO:0006355
Pste4g01227 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 492 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01227 Pste-Chr4 8988320 8996887 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01227 4 8988320 8996887 Pste4g01227 4 8988320 8996887 ECH
Pste5g03036 5 23388475 23399262 Pste4g01227 4 8988320 8996887 PCT