Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02926 AAGTCTTGTGGTGTACCTTGTAATAAATACTTGAAACTACCCGTCCCTTCGGTCCAATTCATACAAACAATTCCAACATACTTTTCTTGGTTCTTCCTCTGTAACCTTTAAAAAAGTCTCTGCCTTTGATCACACATATCATAGGATAGGCTATTATGAAGGTCACAGGCTCTCTGCTCTTGACTTTTGCTTTGGTGTTAACCACCGCCACCGCTTCAGATCCCGATCCTCTTCAAGACCTTTGTGTGGCAGACCTTGCCTCAGCGGTCAAAGTGAATGGGTTCAGCTGCAAAGATAGTGCGAAGGTAAATGCTTCAGATTTCTTCTCAGACATACTGGGGAAACCGGGTGCGACAAACAACACCTATGGCTCCCTGGTGACAGGAGCAAACGTGCAGAAAATCCCAGGACTGAACACTCTTGGTGTGTCTTTGTCTCGCATTGACTATGCCCCCGGTGGACTCAACCCTCCTCACACTCACCCACGTGCCACCGAGATGGTGTTTGTGCTTGAAGGAACTCTCGATGTGGGGTTCATAACCACATCCAATGTCCTCATTTCTAAGACCATCAACAAGGGTGAGATATTTGTCTTCCCAAAAGGGTTGGTTCACTTCCAAAAGAACAATGCCAATCAACCTGCTTCAGTCATATCAGCCTTCAACAGTCAATTGCCTGGCACACAATCCATTGCTCTCACCTTGTTTGCAGCAACGCCACCCGTTCCAGACAATGTGTTGACTCAGGCATTCCAGGTTGGTACTAAGGAGGTTGAAAAAATTAAGTCTAGGCTTGCACCTAAGACATAATCATCATCGTCTGCATCATCATATGCTCTGTCATTTTTCTTTCACTTTCTCTTGTTATTGTTGCTTTACAATTCTTGTTTGCTGAAAATTCATAAAAGATTTGGATTTGGGTATATTGATTTCTATATTTAAAAGATGTTTGTTACTCTGTTAATCAAATGTGGAATTAGTGCTTCTCTCCCTTTTAGCTTCTTAATAGATAT 1012 0.4289 MKVTGSLLLTFALVLTTATASDPDPLQDLCVADLASAVKVNGFSCKDSAKVNASDFFSDILGKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEMVFVLEGTLDVGFITTSNVLISKTINKGEIFVFPKGLVHFQKNNANQPASVISAFNSQLPGTQSIALTLFAATPPVPDNVLTQAFQVGTKEVEKIKSRLAPKT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02926 217 SMART Cupin_1_3 58 207 IPR006045 -
Pste5g02926 217 FunFam germin-like protein subfamily 2 member 1 21 215 - -
Pste5g02926 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Pste5g02926 217 CDD cupin_OxOx 22 213 IPR001929 GO:0030145
Pste5g02926 217 Gene3D Jelly Rolls 21 215 IPR014710 -
Pste5g02926 217 SUPERFAMILY RmlC-like cupins 22 212 IPR011051 -
Pste5g02926 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 211 - -
Pste5g02926 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Pste5g02926 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Pste5g02926 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
Pste5g02926 217 Pfam Cupin 62 206 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02926 Pste-Chr5 22018799 22020133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02926 7 216 Miscellaneous Gene Families AT3G05930 56.872 4.79e-86 252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02926 5 22018799 22020133 Pste4g01378 4 10230103 10231814 PCT