Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01378 GTGTCCTACTTGTTGTTTCTCATGACTTTGGCTCTGCTCTTAGCCTCCGCTGTCTCATCAGATCCTGATCTTCTTCAAGACCTCTGTGTCGCTGACCTTGGCTCAGGTGTGAAAGTGAATGGATTCACCTGCAAAGAAGCAGCAAAGGTAAATGCCTCAGATTTCTTCTCCAACATATTAGCAAAAACAGGAGCCACGAACAACACCTACGGGTCGGTGGTGACTGGAGCCAACGTTCAGAAAGTCCCAGGACTGAACACACTTGGTGTGTCTCTATCTAGAATAGACTATGCCCCAGGTGGCATAAACCCACCTCACACACACCCACGTGCCACAGAGGTTGTGTTTGTGCTGGAAGGGCAACTAGATGTAGGGTTCATAACCACAGCTAATGTGCTAATATCAAAGACCATCAACAAGGGTGACATATTTGTGTTCCCAAAAGGCTTGCTTCACTTTCAAAACAACAATGCTAAGGTCCCTGCTGCTGTCATATCAGCCTTCAACAGTCAACTTCCAGGCACACAGTCCATTGCTACAACCTTGTTTGCTGCCACACCTTCAGTTCCAGACCATGTCTTGACCAAGACCTTCCAGGTTGGAACCAAGCAGGTTCACAAAATCAAGTCCAGGCTTTCACCCTAAAACTAATTCAAAACACCAAGCTAGCTAGCTGCTTTGCTTCTATTCTTTCTTCTCCAACATATATTATTACATGGTTCATGATTATGTGCTCTTTAGATCAATTTTCATGTCATGCCACATTTTATCAATTCTTTTATAAATTCAAAAATTGATCGCATCACATACTCTTAAACTGTATAATAATTTCTTGTCAATTGTCAAGTGTATTCTTTTACCTTCTTTTTAACCTTATGTCACTTGATAATTCAAGGTCGAACAACTGATAAAGAAGAATGTAGAAGGG 928 0.4213 VSYLLFLMTLALLLASAVSSDPDLLQDLCVADLGSGVKVNGFTCKEAAKVNASDFFSNILAKTGATNNTYGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTINKGDIFVFPKGLLHFQNNNAKVPAAVISAFNSQLPGTQSIATTLFAATPSVPDHVLTKTFQVGTKQVHKIKSRLSP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01378 214 Gene3D Jelly Rolls 20 213 IPR014710 -
Pste4g01378 214 SMART Cupin_1_3 57 206 IPR006045 -
Pste4g01378 214 PRINTS Germin signature 169 184 IPR001929 GO:0030145
Pste4g01378 214 PRINTS Germin signature 106 126 IPR001929 GO:0030145
Pste4g01378 214 PRINTS Germin signature 136 156 IPR001929 GO:0030145
Pste4g01378 214 FunFam germin-like protein subfamily 2 member 1 20 214 - -
Pste4g01378 214 Pfam Cupin 60 205 IPR006045 -
Pste4g01378 214 SUPERFAMILY RmlC-like cupins 21 211 IPR011051 -
Pste4g01378 214 CDD cupin_OxOx 21 212 IPR001929 GO:0030145
Pste4g01378 214 ProSitePatterns Germin family signature. 101 114 IPR019780 GO:0030145
Pste4g01378 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01378 Pste-Chr4 10230103 10231814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01378 2 214 Miscellaneous Gene Families AT3G05930 55.607 9.08e-86 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02926 5 22018799 22020133 Pste4g01378 4 10230103 10231814 PCT