Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02870 ATGAGAAAAGATGGGATGGTAAAGAAGGAGGGAGTTAAGGAAATTGGGGGAGGTAGAGAGAGTAAACATGCAAAGCTCGTGGAAGTGCTTCTGGTACTTGCATTCTTTACTTATAACCCATGGACAGTGTGGAGCAACTCACTTTGTCAACAGACAAACGAGGAGGTTCGACCTCACAGCGTCAGCATCACCGAGTTTGGTGCAGTTGGGGACGGAGTTACTCTCAACACAAAAGCATTTCAGAATGCCATCTTTTACCTAAATTCCTTTGCAGACAAAGGTGGAGCGAAGCTTTTTGTTCCCGCTGGCCGCTGGTTAACTGGTAGTTTTGATCTCATCAGTCATCTCACTTTGTGGTTGGACAAGGATGCAGTCATTCTTGGATCAACGAACCCTGAAGATTGGCCGGTTGTGGATCCTCTACCGTCGTATGGGAGAGGAAGAGAGTTGCCAGGGGGAAGGCATAAGAGCCTAATTTATGGGCACAATTTGACTGATGTTATCATAACAGGTAATAATGGAACTATTGATGGTCAAGGGAGTATCTGGTGGAGCTTGTTTCGGAACAGAACTTTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCTAATTTAACCTTCGTGAATACTCCATTTTGGACAATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCAGGATCCTTGCCCCGCCTGATTCACCAAACACTGATGGGATTGATCCAGATTCTTCTGACAATGTATGCATTGAGGACTGTTACATAAGCACCGGCGATGATCTGATTGCCATTAAGAGTGGGTGGGATGAGTATGGCATTGCATACGGTCGCCCCAGCACAAACATTATCATCCACAGGCTTGTCGGTCAAACTCAAACAAGTGCAGGGATTGCCATTGGAAGTGAGATGTCTGGCGGTGTATCTGATGTTCATGTAGAAGATATTCAATTCTACAATTCACACAATGGAATCAGAATAAAGACTTCTCCTGGAAGGGGTGGTTATGTTAGAAACATCTATGTCTCTAACGTGAGCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGGGAACATCCAGATGATGCTTATGATCCAAATGCTCTACCTGTAATAGAAAAGGTTACAATCAAGGATGTGGTGGGAGAAAATATCACAACCGCAGGTCTTATAGAGGGTATAAAAGGTGACAATTTTGTCAACATTTGCCTATCAAACATCATCCTTAATGTGACCTCAAACTATCCATGGAACTGCTCCTATGTTAAAGGATATTCTGACTTGGTACAGCCAGAAGCTTGTGAGCCTCTCAAGGAAAGAATATTTCCTGGCCATTGTTCAGATTGTTACTATTTGTCTGATCAAATTCAGAGTTCGAATAGTCAAAATAGAGCAGGACAAACTTCAGGTGACAAAAGAGGTTGA 1464 0.4276 MRKDGMVKKEGVKEIGGGRESKHAKLVEVLLVLAFFTYNPWTVWSNSLCQQTNEEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWSLFRNRTLDYTRPHLVELMNSTGVLISNLTFVNTPFWTIHPVYCSQVTVQNVRILAPPDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGQTQTSAGIAIGSEMSGGVSDVHVEDIQFYNSHNGIRIKTSPGRGGYVRNIYVSNVSLANVDIAIRFTGLYGEHPDDAYDPNALPVIEKVTIKDVVGENITTAGLIEGIKGDNFVNICLSNIILNVTSNYPWNCSYVKGYSDLVQPEACEPLKERIFPGHCSDCYYLSDQIQSSNSQNRAGQTSGDKRG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02870 487 Pfam Glycosyl hydrolases family 28 156 436 IPR000743 GO:0004650|GO:0005975
Pste5g02870 487 Gene3D - 43 438 IPR012334 -
Pste5g02870 487 SUPERFAMILY Pectin lyase-like 55 450 IPR011050 -
Pste5g02870 487 Pfam Pectate lyase superfamily protein 61 107 IPR024535 -
Pste5g02870 487 SMART pbh1 289 311 IPR006626 -
Pste5g02870 487 SMART pbh1 317 338 IPR006626 -
Pste5g02870 487 SMART pbh1 346 367 IPR006626 -
Pste5g02870 487 SMART pbh1 255 287 IPR006626 -
Pste5g02870 487 SMART pbh1 228 254 IPR006626 -
Pste5g02870 487 PANTHER PECTIN LYASE-RELATED 35 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02870 Pste-Chr5 21373090 21376428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02870 26 467 Glycoside Hydrolase AT3G62110 70.156 0.0 642
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02870 5 21373090 21376428 Pste4g01424 4 10646227 10650005 PCT