Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01424 CCGAGAAACACGGGAACAATGTGGTGAGTGAGTGCTTCATGCATTTGGAAACCTATGAAACTGTCTCTCTTTCTCCGAAGTCAGCGTCAGTGCTGCTGCTGCAATGGAATCATGGCTGAAATGCGACACCCTCATCAACCGATTGCAATAGTTTCTTGAAGATAGCGCCTGGCGTATTCAAAATCATTGCTTGGTGTTGGTGGCTTTCTGGGTTGGTTGCTTCCACAAATGGTAGAGAGAGAAGGAAAGAGTTTTGAAGAAGATACAGAGACATACTGAGAAGGGGGTCCTACTGCTTAATTTTTTTGGGGCATCAACAGTCCCTTTCAATGATTTTTACTTGGCTTCGGTGGTGCTGCTGTGTTCCTTCTCTCAGTCTCATATGACCTATCCAATCACCATCACTCTCCAATTTCATCAATAAACCAAAACTTCTCTCTCTCTCTCCGGTCCTTTTTCATCCCTGGGAGGATTTCAAATTGGTCATTGAGGGTGCCTCAAAAGCTCTGCCTCTGGTCAAATGGGACAAGTGGATCTCACTCATATGAAGAGACTTTCAACTTTGGTGGATGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAACCCATGGACAGTGTGGAGCAATCAGATAAACCCCAAGGAAGTCCGTCCTCACAGTGTAAGTATTACTGAATTTGGAGCAGTTGGTGATGGGATCACTCTCAATACTAAAGCTTTTCAGAATGCTATCTTCTACCTAAATTCATTCGCGGACAAAGGTGGAGCCAAACTTTTTGTACCAGCTGGCCGGTGGTTAACGGGAAGCTTTGATCTCATCAGCCATCTAACTTTGTGGTTGGACAAAGATGCTGTAATTCTTGGATCAACGGACTCTGACGACTGGCCAATTGTGGATCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCAGGTGGAAGGCATAGAAGCCTCATTTATGGGTGCAATTTGACTGATGTTGTCATAACAGGCAACAATGGAACTATAGACGGTCAAGGGAGTATCTGGTGGAACAAGTTTCGGAACAAAACACTGGATTATACACGTCCTCATTTGGTTGAGTTGATGAATTCAAATGGGGTTCTCATTTCAAATATAACTTTCTTGAATTCACCTTTTTGGACCATTCACCCGGTATATTGCAGCCATGTAACAGTTCAGAATGTCACAATAATTGCTCCTCAAAGTTCACCAAATACAGATGGCATTAATCCAGATTCTTCAGACAATGTATGCATTGAGGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATAAAAAGTGGATGGGATGAATATGGTATTTCATTTGGACGACCCAGTACAAATATTATCATCCGCAGGCTCATTGGGAAAACAACTAGCGCAGGGATTTCTATTGGTAGCGAGATGTCTGGAGGTGTCTCAGAAGTTCATGGAGAAGATATTTACATTTTTGATTCGCATAGTGCAATTAGAATAAAAACTTCTCCAGGCCGGGGCGGTTATGTTAGAAATGTCTATATCTCTAATATGATATTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAAATGATACTTATGATCCAGATGCTCTGCCGATAATAGAAAGGATTACTATCAAGGATGTGAAAGGGGGAAAAGTAAAACGTGCCGGCCTTATACAAGGTATTCAAGGTGACAACTTTGTCAATATCTGTCTATCAAACATCACGCTTAATGTGAGCTCAAAATTGCCATGGAACTGCTCTTACGTTGAAGGATACTCTGAGTTGGTTTCACCGGAAGCTTGTGAGCCTCTAAAAGAGAGAATATTCCCTGAGCATTATTCAGATTGTTATTATTTACCAAACCACTTGAAGAGCTTGAGTAAACAAATCATGGAGTTTATTTAGAACGTCAAGAAAGTTATATCTGAAATTTGATTGGTGAGTTTTTTCAACAGGACAAATTTTACCTGACAGAAGAAGTTGAATGGTGTTGCTGATCTGCGGTTCTGTCTGCAGAATGACACCGAGAGATGATTGTTTCTTGTAACTTGTGTGCAGTAACAAATAATTCAGTGATTTTATCAGAAATTTAATTTGAATGATTTCCATTGCTTTCCATTGATTTTTGAAAAGTAAAATGCAAATTTTGTTTCCATTAATTTGATTTTTGAAAAGTAAAATACAAATTTTGTTTCCATTAATTTGATTTCTTGCGGAGAATAAAATAACCTTGCAACAATTGGGATAGCTGGGAAAAGAACATTT 2278 0.3995 MGQVDLTHMKRLSTLVDVFLVLALFSCNPWTVWSNQINPKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTDSDDWPIVDPLPSYGRGRELPGGRHRSLIYGCNLTDVVITGNNGTIDGQGSIWWNKFRNKTLDYTRPHLVELMNSNGVLISNITFLNSPFWTIHPVYCSHVTVQNVTIIAPQSSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNIIIRRLIGKTTSAGISIGSEMSGGVSEVHGEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPNDTYDPDALPIIERITIKDVKGGKVKRAGLIQGIQGDNFVNICLSNITLNVSSKLPWNCSYVEGYSELVSPEACEPLKERIFPEHYSDCYYLPNHLKSLSKQIMEFI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01424 465 SMART pbh1 275 296 IPR006626 -
Pste4g01424 465 SMART pbh1 214 240 IPR006626 -
Pste4g01424 465 SMART pbh1 145 198 IPR006626 -
Pste4g01424 465 SMART pbh1 331 352 IPR006626 -
Pste4g01424 465 SMART pbh1 241 273 IPR006626 -
Pste4g01424 465 Gene3D - 28 421 IPR012334 -
Pste4g01424 465 PANTHER PECTIN LYASE-RELATED 32 447 - -
Pste4g01424 465 Pfam Glycosyl hydrolases family 28 142 421 IPR000743 GO:0004650|GO:0005975
Pste4g01424 465 SUPERFAMILY Pectin lyase-like 39 435 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01424 Pste-Chr4 10646227 10650005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01424 9 450 Glycoside Hydrolase AT3G62110 68.653 0.0 624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01424 4 10646227 10650005 Pste4g01424 4 10646227 10650005 ECH
Pste5g02870 5 21373090 21376428 Pste4g01424 4 10646227 10650005 PCT