Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02561 ATGTCCTTTATGAACTTTTTGAATCTATCATTTGACACTTGTTTGGTCATCTTTGGAAGGTATCGTGTACAAAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCATCTGAGCAGGCCACACTGCAGTGCCTAGGTTGTGTTAAGGCTAAAATACCTGTTGCCAAAAGTTACCACTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTGCATGACCGTGCTGCAAGTGCAGTTAACGAAAATGGAAATGAGGAAGAAGAGTTATTTGGGCGATTTAATAATTCTGGATCTGGATCAATCAATACCAGCTTATCTGCTTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCAACTCTGTATCCGGCAGCCATTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACATATACTCCAACAGCTGATGACATTGGTTATGTCCTTAAATTTGAGTGTGCTGTAGTTGATGCAGAGACCAAACTTACCATAGGGCATTCAAGCACTCTACTAACTTCCCGGGTCATTCCTGCTCCCTCACCTTGCCCTCGCCGGCTGATAAATGTTGATGGGATGGGGCATTTGGATGCTGATGGGCGTACAACAGCTTCAGGAACTTTTACTGTTCTATCATACAACATATTGTCTGATGCATATGCCTCAAATGATCTATACAATTACTGCCCTTCTTGGGCTCTTTCCTGGCCATACCGCAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGACATCATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGAAGATTTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGTCTTTACAAAAGGAAAACAAATGAGGTATACAATGGCAATATTAGTACAATTGATGGTTGTGCTACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCGGTGATTCCAACTACTCAGAAGAAAACTGCCTTGAACAGACTGGTTAAGGACAATGTTGCACTAATAGTTGTTTTAGAAGCAAAAGTTAACAATCAGCCTGTTGATAATCCAGGGAAAAGACAACTTCTTTGTGTGGCAAATACACATGTAAATGTTCACCAAGATTTGAAGGATGTCAAACTCTGGCAGGTGCACACACTCTTGAAAGGATTAGAGAAAATTGCTGCAAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAGTTCCTGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTCAGTGCTTATTCATCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGACAATGCTACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGCGGATTCATTGGTGGTGGAGTCATTGTTAGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACAGCTCTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTCTGCTAGCTGAGTTTCGCTGCTGCAAGAATAGATCCAGGCGTTGA 1620 0.4111 MSFMNFLNLSFDTCLVIFGRYRVQSDKKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNNSGSGSINTSLSASASSASLTNGSATLYPAAITQRSGGETWFEVGRSKTYTPTADDIGYVLKFECAVVDAETKLTIGHSSTLLTSRVIPAPSPCPRRLINVDGMGHLDADGRTTASGTFTVLSYNILSDAYASNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEDFFSPELDKHGYYGLYKRKTNEVYNGNISTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVSAYSSFARTVGLGFEQHKRRLDNATNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02561 539 CDD Deadenylase_CCR4 219 532 - -
Pste5g02561 539 Pfam Endonuclease/Exonuclease/phosphatase family 220 523 IPR005135 GO:0003824
Pste5g02561 539 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 120 532 - -
Pste5g02561 539 Gene3D Endonuclease/exonuclease/phosphatase 187 538 IPR036691 -
Pste5g02561 539 FunFam Carbon catabolite repressor protein 4 1 186 445 - -
Pste5g02561 539 SUPERFAMILY DNase I-like 212 533 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02561 Pste-Chr5 18046880 18051126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02561 245 451 EF-hand Containing Proteins AT5G54130 24.201 3.13e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02561 5 18046880 18051126 Pste5g02561 5 18046880 18051126 ECH
Pste5g02561 5 18046880 18051126 Pste4g02827 4 19896827 19901399 PCT