Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02146 ATGCGGCATCGTGTCCCCCTGTTCCTGGCGTTAGCCACCGTCGCCGCCATGGCCACGGTGCTGTGCGGCGGTTCGGTCAGCACTTTTCTTCCTCTCGAACGGGCCATTCCTCTTAACCAACGACTGGACCTTCAAACTCTGAGAGCTCGCGACAGAGCTCGCCACGGTCGAATCTTGCAAGGTGTCGCTTCTGGCGTGGTCGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGATTGTATTTCACGAAAGTGAAGTTGGGATCACCGGAGAAAGACTTTTACGTTCAGATTGATACTGGAAGTGATATCTTGTGGCTGAATTGCATTACTTGCAGCAATTGCCCGCATTCTAGTGGCTTAGGGATTGGGCTCAATTTCTTTGACACCGCTGGTTCATCCACTTCTGCGCTTGTTTCATGCGCTGACCCCATATGTTCTTTTGCGGTACGAACTGGGACAAGTCGATGCTCTTCCCAGGCTGATCAGTGCAGCTACACCTTTCAGTATGGGGATGGAAGTGGAACAACTGGTTATTATGTTTCTGATACAATGTATTTTGATACTGTCCTGGGACAGTCTGTGGTTACCAACTCTTCTTCCACCATCGTTTTTGGGTGTAGCACATACCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGATTTGGCCCTGGTGCTCTGTCTGTTATATCACAATTGTCATCACAGGGTGTAACACCCAAAGTGTTCTCTCATTGCCTAAAAGGAGCAGACGATGGAGGTGGTGTGCTAGTTCTTGGTGAAATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGCATTGCTGTCAATGGTCAACTTCTCCCAATTGATTCAAATGTATTTACAACAGCTAACAATCGAGGAACAATTGTTGACTCTGGCACAACATTGGCATATCTTGTTCAAGAAGCTTACAATCCTTTTGTTGATGCTTTTGTTGTCTCCAGGAAGAGTTTTTTGGGCTTCCAATCAAATCTTGGCCCCAATTCCATTCCAAATCCATTTTCTCAAACTTTAAAACTAATAACTGCTGCTGTGTCACAGTTTTCGAAACCCATTATTTCAAAAGGGAACCAGTGTTATCTGGTATCCAACAGCGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGCGGAGCATCTATGGTTTTAAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGGTTCCAAAAAGTGGAGGAGGGATTCACAATTTTAGGAGATCTTGTTCTAAAAGATAAGATATTTGTATATGACTTGGCTAATCAACGAATTGGATGGGCCAATTATGATTGTTCCTTGTCTGTGAACGTCTCTGTGGCCTCGAGCAAGAGCAAGGATGCATACATCAACAATTCTGGACAGATGAGTGTGAGCTGCTCCCACATAGGCACTTTCTCTAAGTTGCTAGCTGTAGGCATTGCTGCTTTCTTTGTGCACATAATAGTTTTCATGGAGTCCCAATTTTTGTAA 1596 0.4467 MRHRVPLFLALATVAAMATVLCGGSVSTFLPLERAIPLNQRLDLQTLRARDRARHGRILQGVASGVVDFSVQGTSDPYFVGYGLYFTKVKLGSPEKDFYVQIDTGSDILWLNCITCSNCPHSSGLGIGLNFFDTAGSSTSALVSCADPICSFAVRTGTSRCSSQADQCSYTFQYGDGSGTTGYYVSDTMYFDTVLGQSVVTNSSSTIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSQGVTPKVFSHCLKGADDGGGVLVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSNVFTTANNRGTIVDSGTTLAYLVQEAYNPFVDAFVVSRKSFLGFQSNLGPNSIPNPFSQTLKLITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLNPEHYLMHYGFLDGAAMWCIGFQKVEEGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLSVNVSVASSKSKDAYINNSGQMSVSCSHIGTFSKLLAVGIAAFFVHIIVFMESQFL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02146 531 PANTHER ASPARTYL PROTEASES 25 467 IPR001461 GO:0004190|GO:0006508
Pste5g02146 531 Gene3D Acid Proteases 357 479 IPR021109 -
Pste5g02146 531 Gene3D Acid Proteases 272 356 IPR021109 -
Pste5g02146 531 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Pste5g02146 531 Gene3D Acid Proteases 68 271 IPR021109 -
Pste5g02146 531 CDD pepsin_A_like_plant 85 473 IPR034161 -
Pste5g02146 531 PRINTS Pepsin (A1) aspartic protease family signature 445 460 IPR001461 GO:0004190|GO:0006508
Pste5g02146 531 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Pste5g02146 531 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Pste5g02146 531 SUPERFAMILY Acid proteases 80 476 IPR021109 -
Pste5g02146 531 FunFam Aspartic proteinase-like protein 2 66 271 - -
Pste5g02146 531 ProSiteProfiles Peptidase family A1 domain profile. 85 469 IPR033121 -
Pste5g02146 531 Pfam Xylanase inhibitor C-terminal 288 343 IPR032799 -
Pste5g02146 531 Pfam Xylanase inhibitor C-terminal 381 469 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02146 Pste-Chr5 14013697 14019281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02146 83 474 Miscellaneous Gene Families AT1G44130 27.027 1.14e-35 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02146 5 14013697 14019281 Pste5g02146 5 14013697 14019281 ECH
Pste5g02146 5 14013697 14019281 Pste4g02250 4 16244220 16250251 PCT