Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02250 AAAGAAACTGTCAGACTCCTTTCTCTCTCTCTTTCAACTTTGGAGTCCCTCGCCATTCCCATTAGACAGACAAAACCCAAAACCACACGCAATAAAAAAATAAACATAAAAATGCGGTGCTGCTGCATTCCTATGCTGTTGGCCGTGATCACCCTGCTGCTGTCGGCGGTGCGCGGTGTTTTCCTCCCTCTGGAGCGGAGCATTCCTCCGAGTCACCGCGTGGAGCTGGCGGCGCTCAGTGCCCGCGACAGAGCCCGCCACGCCAGAATGTTGGGCGCCGTCGCCGGCGGCGTCGTCGACTTCTCCGTCCAAGGCTCCTCCGATCCAAACTCTGCCGGGTTGTATTACACCAAAGTGAAGATGGGAACTCCTCCTAAAGAATTTAACGTTCAGATTGATACAGGGAGTGACACATTGTGGGTGAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTCAACTGGGGATTGAGCTTAATTTCTTTGACACAGTTGGGTCGACCACGGCTGCTTTGGTTCCCTGCTCGGACCCTATATGCACTTCTGGGGTTCAGGGTTCTGCCGCTCAGTGCTCCTCAAGGGTTAATCAGTGCAGTTATACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCAGACACAATGTATTTTAACTTGATCATGGGACAGCCTCCCGCGGTTAACTCTTCAGCTACCATTGTTTTTGGCTTCGCTTCTGGTAGATTTGCTTATATTCCCATGTTGATGCCAATAGTTGATATGGATTTTTCCATTTTGGTTTTAAAAGAGACTGTTTTGGATGATTGTACTGGAAACAGGTGTAGCATCACTCAGTCTGGAGATTTGACTAAGACAGATAAGGCAGTTGATGGAATTTTTGGGTTTGGACCTGGTGCTCTATCTGTTGTATCACAGTTGTCATCACGAGGAATAACACCCAAAGCTTTCTCTCATTGCTTAAAAGGAGATGGAAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTACAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTACAGAGTATTGCTGTCAATGGGCAATCTCTCCCAATTAATCCAGCTGTATTTGCAACATCTAACAACCGAGGAACTATAGTTGACTGTGGTACGACATTAGCGTATCTTGTTCAAGAAGCTTATGATCCTCTTGTCAATGTAATAACTACTGCCGTGTCACAATCTGCTAGGCAAATGAATTCCAAAGGAAACCAGTGTTATCTGGTCTCAACCAGTATTGGTGACATTTTTCCTTCGGTCAGTTTAAACTTTGAGGGTGGAGCATCGATGGTTTTAAAGCCAGATCAGTACCTTATGCATAATGGTTACCTTGATGGAGCTGAAATGTGGTGCATCGGTTTCCAGAAAATGCAGGATGGAGTCTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTATGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAACGTTTCTGTGACTACGAGCAAGGATGAGTATGTCAATGCGGGACAGATAAGTGTCAGCAGCTCCGAAAAATGTTTTCTTTCTAAGTTACTAGCTGTAAGCATTGTGGTTCTCTCTATGTACATAATGTTGGTATGAAAAATTTAAAGTATGTCATGTGTTGGGAATCAAAGTCATCACTCAAGATAATGTAAAATAAAGTTTTCAACATTAACCATGGGAAGAAAAACAAGTGATAGAGAAGACAAAGATTCATGATTCAACAAGTAGCTTGGAAGAAAATGCAGATTTGGATAGAAGCTTGACAAATGGAGATTTCGATAAAGGGTTGAGAATGGAAATTTACAAAAGTTTGATTAGTGTAAATTTAGATGGAAGTTGAAAGATTGGTTGAAATATGATTGTAAGTAACCAATTTTGACCAGGTAAAAAAGGGATGATAATCGAAAGCTAATTAAAAAAACTAATTATTGTTAACATTTCCGAAGTTTGAATAATTTGTTTATATGATGGCTTCTTGTTA 2065 0.4189 MRCCCIPMLLAVITLLLSAVRGVFLPLERSIPPSHRVELAALSARDRARHARMLGAVAGGVVDFSVQGSSDPNSAGLYYTKVKMGTPPKEFNVQIDTGSDTLWVNCNTCSNCPQSSQLGIELNFFDTVGSTTAALVPCSDPICTSGVQGSAAQCSSRVNQCSYTFQYGDGSGTSGYYVSDTMYFNLIMGQPPAVNSSATIVFGFASGRFAYIPMLMPIVDMDFSILVLKETVLDDCTGNRCSITQSGDLTKTDKAVDGIFGFGPGALSVVSQLSSRGITPKAFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQSLPINPAVFATSNNRGTIVDCGTTLAYLVQEAYDPLVNVITTAVSQSARQMNSKGNQCYLVSTSIGDIFPSVSLNFEGGASMVLKPDQYLMHNGYLDGAEMWCIGFQKMQDGVSILGDLVLKDKIVVYDLAHQRIGWANYDCSLSVNVSVTTSKDEYVNAGQISVSSSEKCFLSKLLAVSIVVLSMYIMLV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02250 522 Pfam Xylanase inhibitor C-terminal 318 469 IPR032799 -
Pste4g02250 522 SUPERFAMILY Acid proteases 74 475 IPR021109 -
Pste4g02250 522 ProSiteProfiles Peptidase family A1 domain profile. 78 469 IPR033121 -
Pste4g02250 522 PANTHER ASPARTYL PROTEASES 10 467 IPR001461 GO:0004190|GO:0006508
Pste4g02250 522 Gene3D Acid Proteases 63 211 IPR021109 -
Pste4g02250 522 PRINTS Pepsin (A1) aspartic protease family signature 445 460 IPR001461 GO:0004190|GO:0006508
Pste4g02250 522 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Pste4g02250 522 PRINTS Pepsin (A1) aspartic protease family signature 348 359 IPR001461 GO:0004190|GO:0006508
Pste4g02250 522 CDD pepsin_A_like_plant 78 473 IPR034161 -
Pste4g02250 522 Gene3D Acid Proteases 302 480 IPR021109 -
Pste4g02250 522 Pfam Xylanase inhibitor N-terminal 248 300 IPR032861 -
Pste4g02250 522 Pfam Xylanase inhibitor N-terminal 78 203 IPR032861 -
Pste4g02250 522 FunFam Aspartic proteinase-like protein 2 302 480 - -
Pste4g02250 522 Gene3D Acid Proteases 236 300 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02250 Pste-Chr4 16244220 16250251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02250 62 474 Miscellaneous Gene Families AT1G44130 25.571 6.97e-36 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02250 4 16244220 16250251 Pste4g02250 4 16244220 16250251 ECH
Pste5g02146 5 14013697 14019281 Pste4g02250 4 16244220 16250251 PCT