Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01999 GTATAAACAGTAGAGTCAGTTTGAAAGTTGAAACAGTAGAGTCTAGGTTGGTTGGTTTGGCATAAGCAGAATGCAGAGTTCAATGGAGAGAAGAGGCATGGAAAACATTGCAGAAGCATACCCGAAGAAGAAAAAGTCACTGAGCTCTCTAATGACACCGAGCCATTCCTTCAAAGAGGACACGTACATGGTTTCCCACCTTAAAGCCTGGGAGAGAAAAGCCCTGCAAGAACTTAAGCAGAAACTCCTGACTTCATCCGACCCCGACCCTTCAATGTGGGGCGTGCCATTGCTGAGTGCCGAGGACAGAGCTGACGTCATTCTCTTGAAGTTCCTTCGCGCCAGGGACTTCAGAGTCCACGACGCTCTCACCATGCTCCTCAACTGCCTCTCTTGGCGGGCCCACTTCCGGGCCGACAACCTTCTCCAAGAGGATTTGGGCTTCAAGGAGCTTGAAGGAGTCGTGGCTTACACTCACGCCTTTGACAGAGATGGCCACCCTGTTTGCTACAACGCTTATGGTGTCTTCAAGGATAACGACTTCTATCAGAGGGTCTTTGGCGATCAGGATAAGCTCAACATCTTCTTGCGCTGGAGGCTTCAGGTTCTCGAGAGAGGTATCAAAATGCTTCATTTCAAGCCTTCTTCTGTCAATTCTCTCATTCAGGTCACCGACCTTAAGGACATGCCCAAGAGACAACTCAGGCTCGCTTCCAACCACATTCTCTCCTTGTTTCAAGATAACTATCCTGAAATGGTCGCTCGTAAGATTTTCATCAATGTGCCATGGTACTTCAGCGTGTTGTATTCAATGTTCAGCCCGTTTCTGACCCAAAGAACTAAGAGCAAGTTTGTGATAGCTAAGGAGGGAAATGCAGCAGAGACACTCTACAAATTTATAAAGCCCGAGAATATTCCTGTTCGGTATGGTGGATTGAGTCGACCCAGCGATTTGGAGAATGGTCCCCCAAAACCTGCTTCTGAATTCACAGTTAAAGGAGGAGAGAAAGTGAACATACAAATAGAAGGAATTGAGAGTGGTGCAACTATTACGTGGGATATTGTGGTGGGAGGCTGGGACTTGGAATATAGCGCTGAATTTGTCCCTGTTGCACAAGGTAGCTACACCTTAGCAGTTGATAGGGCAAGGAAGGTTGAGGCCACAGAAGAAGCAATCCATAACACTTTCACATCCAAAGAAGCTGGCAAAATGATACTCTCTGTCGATAACTCTGCCTCCAGGAAGAAAAAAGTTGCTGCTTATCGCTATTGTGTGCGCAAATGCAACTCACCATCCGAGCTACAATTAAGCCCCAAATAATTGTAGGAACACTACATTACATATATATAATATATAATATTTTGTTTATGAAGTTTTTGACTCTG 1386 0.4582 MQSSMERRGMENIAEAYPKKKKSLSSLMTPSHSFKEDTYMVSHLKAWERKALQELKQKLLTSSDPDPSMWGVPLLSAEDRADVILLKFLRARDFRVHDALTMLLNCLSWRAHFRADNLLQEDLGFKELEGVVAYTHAFDRDGHPVCYNAYGVFKDNDFYQRVFGDQDKLNIFLRWRLQVLERGIKMLHFKPSSVNSLIQVTDLKDMPKRQLRLASNHILSLFQDNYPEMVARKIFINVPWYFSVLYSMFSPFLTQRTKSKFVIAKEGNAAETLYKFIKPENIPVRYGGLSRPSDLENGPPKPASEFTVKGGEKVNIQIEGIESGATITWDIVVGGWDLEYSAEFVPVAQGSYTLAVDRARKVEATEEAIHNTFTSKEAGKMILSVDNSASRKKKVAAYRYCVRKCNSPSELQLSPK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01999 416 ProSiteProfiles GOLD domain profile. 270 404 IPR009038 -
Pste5g01999 416 FunFam SEC14 cytosolic factor family protein 39 112 - -
Pste5g01999 416 Pfam CRAL/TRIO domain 129 288 IPR001251 -
Pste5g01999 416 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 305 407 IPR036598 -
Pste5g01999 416 SMART CRAL_TRIO_N_2 81 106 IPR011074 -
Pste5g01999 416 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 121 294 IPR001251 -
Pste5g01999 416 Pfam CRAL/TRIO, N-terminal domain 51 105 IPR011074 -
Pste5g01999 416 Gene3D GOLD domain 300 402 - -
Pste5g01999 416 SUPERFAMILY CRAL/TRIO domain 127 292 IPR036865 -
Pste5g01999 416 SMART sec14_4 127 291 IPR001251 -
Pste5g01999 416 PANTHER PATELLIN-1 12 404 IPR044834 GO:0008289
Pste5g01999 416 Gene3D - 119 299 IPR036865 -
Pste5g01999 416 SUPERFAMILY CRAL/TRIO N-terminal domain 35 122 IPR036273 -
Pste5g01999 416 Gene3D - 40 112 - -
Pste5g01999 416 CDD SEC14 125 289 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01999 Pste-Chr5 12688739 12690780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01999 85 298 Acyl Lipid Metabolism Gene Families AT1G55840 27.155 4.71e-13 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01999 5 12688739 12690780 Pste5g01999 5 12688739 12690780 ECH
Pste5g01999 5 12688739 12690780 Pste6g00458 6 1714689 1717551 PCT