Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste5g01927 | GCACTATTAAAGAAAGGGACTCAGTTGATAAAGTATAGCCGAAAAGCAAAGCCAAAAGTTTGTCCATTCAGACTCTCTCTGGATGAAACAACTCTGATTTGGATTTCTCGTAAGAAGGAAAGGAACTTGAAATTATCATCAGTTTCACGTATTATTTCTGGACAAAGAACTTCTGTCTTTAGAAGATATTTACAACCAGAAAAGGATTGTCTTTCATTTTCACTTGTTTATAATAATGGGGAGCGAACACTTGACTTGATATGCAAGGACAAAGATGAGACAGAATTATGGTTTATAGGTCTGAAGACATTAATTTCTACTGGAAAGCTTAATAGGAGTATTGGAAATGTAGCCTATCATATGGATGGTGTTGAATTTATTCCAAACAATCATTCTTTTGGTGGAGCATTAGAATTTGCTATCAGCATTGCTCGTAACAAGGTTTCTTTTGACTTTGGTTCTCATGAGTCGTCATTGAATTTGGGTAGCACGAATGTGGGATTAGAGTGTGGTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTGTTAGTGTGTCGAGTACACCTAGTGTTTCAAGTGCAGGGTCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGGGTTTCACATGATGGATTCAGCACTCAAGCCCCATCCACAACAGATGTGTTGATTCCTAAGCCATTAGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCCTCTGGCATGCGACACATTGCATTAGTAACTAGGCAAGGGGAGGTTTTTACTTGGGGGCAAGAAACTGGAGGAAGACTTGGCCATGGAATTGATAAAGATTTTGGTCGTCCTCAACTTGTTGAGTTTTTGTCTGTTACTAATATGGATTTTGTTGCTTGTGGAGAGAATCATACATGTGCTGTATCTACATCTGATGATCTTTTCTCATGGGGTGATGGTAAATATAATGTTGGACTTCTTGGTCATGGAACTGATGTTAGCCATTGGATACCAAAGAGGGTTAGTGGTCCTCTAGAAGGACTTCAAGTTATATCTATTGCATGTGGCACATGGCATTCAGCATTAGCAACCTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAAGTAGAGAAAGTGTATCATACCCAAAAGAGGTACAATTATTAAGTGGATTGAAAACTATTAAGGTTGCATGTGGAGTGTGGCATACTGCAGCTATTGTAGAGGTTATTTTTCAGTCTGGTTCAAATATTTCGTCTAGGAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCCACTTGTGTCTCTGCACTTATTGAGTATAATTTCCACCAAATAGCATGTGGACACACTATGACTGTTGCCCTTACTACATCTGGTCATATATTTACAATGGGAAATACAGAAAACGGTCAATTAGGAAATCCTTTGGCTGATGGAAAAGTACCTATCCTAGTACAAGATAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCCTTGACATCAAGAAGTGAACTATATACTTGGGGAAAAGGTGTCAATGGAAGGTTAGGACATGGAGACATAGAGGATAGAAAATGTCCAACAATAGTGGAATCCTTAAAAGACAGGCATGTGAAGAATATCTCTTGTGGCTCAAACTTTACTTCTTGCATATGCATTCATAAATGGGTCTCTGGGGTTGACCAATCTATTTGCACTGGTTGTAGACAACCATTTGGCTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGATTGGTCCATTGTCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCAGCATTAGCTCCCACACCAGGAAAACCTCATCGCGTGTGTGATTCTTGTTATAATAAGCTTAAAGTTGTTGAGGCATGTGCTAGTTCCAACCTTAACAGGAAAGTTACAACTACACCTCGTACTTCTCTAGATGGTAGGGAAAGACTTGGGCAAGGAGAAATCAAATCTGCAAGACTTATTTTGCCTTCTAGCACAGAACCAATAAAATATCATCAAATATTGACTAGTAAGTTAGGAAACAGATATGATTATTCTTCCTTGGCTCCAACTTCCCAAGGAACTTCACTTCAACAATTAAACGATGTTGCTTTTCCACACTCAATAAATTCAACTCAAAATGCTTGGAAGTCTTCTATAACTCCTGCTCCACCACCAACTCCACCTAATTTAAGACCATCATCTCCTTATGCAAGAAAGCCAAGTCCACCACGTTCTAGAACTGCAGGATTTTCTAAAAGTCTTGTTGATAGTTTGAGGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAACATGCAAAACCAGATTCGAAGTTTGAAGTTAAAAAATAACGTGGAAATTCAAAAGCTCCAGAAAAACGTCACGGAAGCTACCTCTTTTGCTGAAGGGGAGTCTTCCAAGTACAAATCAATGAAAGAATTTTTTGAGTCTACGGTGTTTCAGATGAAGGAAATGATTGAGAAGTTGCCACCAGAAGTTTTAGAAAGTGAAAATTGGAAAACCATGCTTACTCAAGCTGAGGATTTTCTAAAAGAAAGTTTAGAATTTGAAACACCTTCTGTGTCATCAAGTGTGAAGTCTCAACAACAAAATGCACCCAATACACTTGATTCAAATAATAGCTCTTTTAAATTGCAAGAAAATAGAATAGAAGAAAATAATGAAAATGAAAAAGTTGACTCATCATCACAAGAGGATGGAAATGTTCTTCAAGGAAGTAATAGCTCATCTTTATCAAACAGTCAAGCATCGTTGTCTTCACAAAATAGTTCAAAATCCCAAGACTATGCAAGACGAAGCAAAGAAGAAGAAACACAAGTCATTGAACAGTTCGAACCTGGCGTATATGTGACACTAATAGTGAAGACAGGTGGTGTTAAGGTTTTCAAACGAGTTAGATTC | 3030 | 0.3812 | ALLKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISRKKERNLKLSSVSRIISGQRTSVFRRYLQPEKDCLSFSLVYNNGERTLDLICKDKDETELWFIGLKTLISTGKLNRSIGNVAYHMDGVEFIPNNHSFGGALEFAISIARNKVSFDFGSHESSLNLGSTNVGLECGNMQPRTSIGDGFRVSVSSTPSVSSAGSGPDDIESLGDVYIWGEVWADGVSHDGFSTQAPSTTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGQETGGRLGHGIDKDFGRPQLVEFLSVTNMDFVACGENHTCAVSTSDDLFSWGDGKYNVGLLGHGTDVSHWIPKRVSGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGSRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVIFQSGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHIFTMGNTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGAHHVAALTSRSELYTWGKGVNGRLGHGDIEDRKCPTIVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKVVEACASSNLNRKVTTTPRTSLDGRERLGQGEIKSARLILPSSTEPIKYHQILTSKLGNRYDYSSLAPTSQGTSLQQLNDVAFPHSINSTQNAWKSSITPAPPPTPPNLRPSSPYARKPSPPRSRTAGFSKSLVDSLRKTNELLNQEVSNMQNQIRSLKLKNNVEIQKLQKNVTEATSFAEGESSKYKSMKEFFESTVFQMKEMIEKLPPEVLESENWKTMLTQAEDFLKESLEFETPSVSSSVKSQQQNAPNTLDSNNSSFKLQENRIEENNENEKVDSSSQEDGNVLQGSNSSSLSNSQASLSSQNSSKSQDYARRSKEEETQVIEQFEPGVYVTLIVKTGGVKVFKRVRF | 1010 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste5g01927 | 1010 | Pfam | FYVE zinc finger | 591 | 656 | IPR000306 | GO:0046872 | |
| Pste5g01927 | 1010 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 318 | 372 | IPR000408 | - | |
| Pste5g01927 | 1010 | PRINTS | Chromosome condensation regulator RCC1 signature | 318 | 334 | IPR000408 | - | |
| Pste5g01927 | 1010 | PRINTS | Chromosome condensation regulator RCC1 signature | 534 | 555 | IPR000408 | - | |
| Pste5g01927 | 1010 | PRINTS | Chromosome condensation regulator RCC1 signature | 359 | 375 | IPR000408 | - | |
| Pste5g01927 | 1010 | PRINTS | Chromosome condensation regulator RCC1 signature | 476 | 494 | IPR000408 | - | |
| Pste5g01927 | 1010 | PRINTS | Chromosome condensation regulator RCC1 signature | 375 | 389 | IPR000408 | - | |
| Pste5g01927 | 1010 | PRINTS | Chromosome condensation regulator RCC1 signature | 248 | 261 | IPR000408 | - | |
| Pste5g01927 | 1010 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 604 | 663 | IPR013083 | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 266 | 317 | IPR000408 | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | PH domain profile. | 1 | 106 | IPR001849 | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 539 | 590 | IPR000408 | - | |
| Pste5g01927 | 1010 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 252 | 262 | IPR000408 | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 487 | 538 | IPR000408 | - | |
| Pste5g01927 | 1010 | MobiDBLite | consensus disorder prediction | 924 | 938 | - | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 595 | 657 | IPR017455 | - | |
| Pste5g01927 | 1010 | Gene3D | - | 1 | 112 | IPR011993 | - | |
| Pste5g01927 | 1010 | MobiDBLite | consensus disorder prediction | 749 | 786 | - | - | |
| Pste5g01927 | 1010 | MobiDBLite | consensus disorder prediction | 896 | 977 | - | - | |
| Pste5g01927 | 1010 | MobiDBLite | consensus disorder prediction | 939 | 970 | - | - | |
| Pste5g01927 | 1010 | MobiDBLite | consensus disorder prediction | 896 | 923 | - | - | |
| Pste5g01927 | 1010 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 178 | 426 | - | - | |
| Pste5g01927 | 1010 | MobiDBLite | consensus disorder prediction | 756 | 775 | - | - | |
| Pste5g01927 | 1010 | SUPERFAMILY | RCC1/BLIP-II | 207 | 592 | IPR009091 | - | |
| Pste5g01927 | 1010 | SMART | fyve_4 | 589 | 658 | IPR000306 | GO:0046872 | |
| Pste5g01927 | 1010 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 981 | 1010 | IPR013591 | - | |
| Pste5g01927 | 1010 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 411 | 421 | IPR000408 | - | |
| Pste5g01927 | 1010 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 39 | 851 | - | - | |
| Pste5g01927 | 1010 | Coils | Coil | 791 | 818 | - | - | |
| Pste5g01927 | 1010 | Gene3D | - | 186 | 429 | IPR009091 | - | |
| Pste5g01927 | 1010 | Gene3D | - | 430 | 603 | IPR009091 | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | BRX domain profile. | 981 | 1010 | IPR013591 | - | |
| Pste5g01927 | 1010 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 486 | 535 | IPR000408 | - | |
| Pste5g01927 | 1010 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 372 | 421 | IPR000408 | - | |
| Pste5g01927 | 1010 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 437 | 483 | IPR000408 | - | |
| Pste5g01927 | 1010 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 319 | 368 | IPR000408 | - | |
| Pste5g01927 | 1010 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 266 | 314 | IPR000408 | - | |
| Pste5g01927 | 1010 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 540 | 587 | IPR000408 | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 373 | 424 | IPR000408 | - | |
| Pste5g01927 | 1010 | SUPERFAMILY | FYVE/PHD zinc finger | 591 | 661 | IPR011011 | - | |
| Pste5g01927 | 1010 | SUPERFAMILY | PH domain-like | 2 | 105 | - | - | |
| Pste5g01927 | 1010 | CDD | PH_PLC_plant-like | 3 | 106 | - | - | |
| Pste5g01927 | 1010 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 435 | 486 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste5g01927 | Pste-Chr5 | 12216677 | 12222147 | Dispersed/Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste5g01927 | 5 | 12216677 | 12222147 | Pste6g00408 | 6 | 1412390 | 1414309 | PCT |