Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00959 GGAATATCTGATAGCTAGCAACAGCATCTTCTCATGGCACCTACAAAATTTGAGATGCTGCTGAGCATGTCCTTTGTGATGGCTCTTTGGGGTGCCACATTGGCTCAATCTCAATCAAGTTGCACCAATGTGTTCATAAGTCTTTCTCCATGTCTTGACTATGTAACAGGAAATTCCTCTATCCCTTCCTCTTCTTGCTGCTCTCAACTTGCCTTTGTGGTGAGTTCACAGCCACTGTGTCTATGTGAAGTTGTCAATGGTGCTGCTTCTTCTATTGCTGCAAGTTTCAACATCAATCAGACTCGAGCTTTGGCACTTCCCACTGCTTGCAATGTTCAGACACCTCCTATTAGCACCTGTAGTGCCTCAGCCTCTTCCTCACAAGGTCTTTCTATTTCCAACATTCCGAATTCCCCTTCAGGGATTGGATCCAACACTGTTTCATCAACAACAAGAGGCATAAGTGTCGGTGGCTCATCTCATGGAAATACTAATTTGCCATGTTCTGTGCTGGTCATGTTTGTCCTTGCAGCGACTTTGACTTTCACCTCCGAGATGACGACCTAAACAGCGTGGCTGCATATATATTTTTTAAACCTTGTTATTTTACTGCTTTGAAGCTAATTAGGACTTCACCTGTATATTTTACCTACATTTTTTTTTCTATTTTCCTTCTAATGATGTCTGCTATATGTGCCTTAATACCAAATTAATAATTTCTACCATAACATACTGTCAAAA 741 0.413 MAPTKFEMLLSMSFVMALWGATLAQSQSSCTNVFISLSPCLDYVTGNSSIPSSSCCSQLAFVVSSQPLCLCEVVNGAASSIAASFNINQTRALALPTACNVQTPPISTCSASASSSQGLSISNIPNSPSGIGSNTVSSTTRGISVGGSSHGNTNLPCSVLVMFVLAATLTFTSEMTT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00959 177 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Pste5g00959 177 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Pste5g00959 177 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Pste5g00959 177 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 15 148 IPR043325 -
Pste5g00959 177 Pfam Probable lipid transfer 17 109 IPR016140 -
Pste5g00959 177 SMART aai_6 30 109 IPR016140 -
Pste5g00959 177 CDD AAI_LTSS 37 101 - -
Pste5g00959 177 Gene3D - 27 109 IPR036312 -
Pste5g00959 177 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 112 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00959 Pste-Chr5 6300699 6302219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00959 5 110 Lipid Metabolism Gene Families AT3G22600 54.206 2.48e-35 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00959 5 6300699 6302219 Pste5g00959 5 6300699 6302219 ECH
Pste4g02167 4 15767474 15768505 Pste5g00959 5 6300699 6302219 PCT