Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00878 CTCCCTCCCTCTACTTCTAAGTTCTATGTTCTAACCCCACTCTTCACTTGTTAATGCCTCTCAAGTCTGAAGAACTCAACACAATGGAGCTTAGCAAGGTCACCTTAGAGATCTTTTCCAAACTTGAACAGCAATGGCTCTCCCACTACGAAGTGGCTTCCAAAATCCGCATTCTCAGCATTGACGGCGGTGGAACCGCTGCCATTGTCGCCGGAGCCTCCCTCATCCACCTCCAAGACCAGATCCGCTCCCAAACCTCCGATCCCCACGCTCAAATCACCGATTACTTCGACATCATCGCCGGCACCGGCATTGGCGCCATCCTCGCCTCCATGATCACCGCCGACGACGGCTTCGGACGTCCTCTCTACACCGCCACCGACGCCGTCCGCTTCGTCTCCCAAAACAACCGCCAACTCTACAAGCCCAAGCGCACCCGCCTGTTTCTCCGCCGCCGCCGGAGATTCTCCTCACGGAGCATGGAAAACGCACTGAAACGCGTTTTCCAGAGAAAGGAGGATGAAGGACGGTTGTTGACTCTGAAGGACACGTGTAAGCCGCTCCTTATCCCTTGCTTTGACCTCAAGAGCTCTGCGCCATTCGTGTTCTCCCGAGCCGACGCTTCCGAGTCACCGAGTTTCAACTTCGAGCTTTGGAAGGCATGTCGCGCCACGTCAGCCACGCCGGGACTTTTCGGGCCGTTCCAGTTCTCCTCCGTCGACGGAAAGACCTCGTGCTCCGCCGTCGACGGCGGTTTGGTGATGAACAATCCTGCCGCGGCGGCGATCACGCATGTCCTCCACAACAAGCGCGATTTCCCGTCGGTTAACGGCGTGGAGGATCTCCTGGTTCTCTCAATCGGAAACGGAGCTCCGGCGAAGAGAGCAAACGACGGCGGTGAGTGCTCCACGTCGGCGGTGGTTGACATTGCTCTCGACGGCGTTTCCGAGACCGTTGACCAGATGTTAGGGAACGCCTTCTGTTGGAACCGTACGGACTATGTCAGGATTCAGGCGTTCGGTTTGAAAGAAGGAAAAGAAGAGAAGGTGCTGAGCGAGAGAGTGCTTGAATCGTTACCATTTGGAGGCAAACGGTTACTGCAGGAAACCAACGGTAGCAGAATCGAGAGCTTTGTGCAACGTCTTGTTGCTACCGGAAAATCAAGTCTGCCACCTAGTCCGTGCAAGGCTCGGCCTCACTGACGGCGTTTTCTTCTTTTTTTTTTTTTTTTAATATTTGACGCTGTGACTTGTATCGAAGGTTAAATTAGGCCATGA 1277 0.5466 MPLKSEELNTMELSKVTLEIFSKLEQQWLSHYEVASKIRILSIDGGGTAAIVAGASLIHLQDQIRSQTSDPHAQITDYFDIIAGTGIGAILASMITADDGFGRPLYTATDAVRFVSQNNRQLYKPKRTRLFLRRRRRFSSRSMENALKRVFQRKEDEGRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKACRATSATPGLFGPFQFSSVDGKTSCSAVDGGLVMNNPAAAAITHVLHNKRDFPSVNGVEDLLVLSIGNGAPAKRANDGGECSTSAVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLKEGKEEKVLSERVLESLPFGGKRLLQETNGSRIESFVQRLVATGKSSLPPSPCKARPH 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00878 382 PANTHER PATATIN-LIKE PROTEIN 6 11 379 - -
Pste5g00878 382 Pfam Patatin-like phospholipase 41 245 IPR002641 GO:0006629
Pste5g00878 382 CDD Pat17_PNPLA8_PNPLA9_like 40 341 - -
Pste5g00878 382 Gene3D Cytosolic phospholipase A2 catalytic domain 29 372 - -
Pste5g00878 382 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 41 245 IPR002641 GO:0006629
Pste5g00878 382 SUPERFAMILY FabD/lysophospholipase-like 37 327 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00878 Pste-Chr5 5654131 5655602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00878 11 378 Acyl Lipid Metabolism Gene Families AT3G63200 68.449 0.0 540
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00878 5 5654131 5655602 Pste5g00878 5 5654131 5655602 ECH
Pste5g00878 5 5654131 5655602 Pste4g02197 4 15954513 15956450 PCT