Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00299 GACCCACTTAGTAGTATATATGTTGATGATTCACCTTCTATTGATGATGGTGGGACATTACTCAAGAACTTCATCAAGCAAAACACAAATGTTCTCAGCTTAAACAAGTTATTAGACAAGCGTAGTTCCCTTAAAAAGGTTAATGTTAATGATTATGGAGCTGAAGGGAATGCTGATACTGATGACACAGAGGCTTTTGAGAAAGCTTGGGAAGAAGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTGAGGAGAATTATCTACTCAAACCAATCACATTCTCTGGCCCTTGCAAACCTAACGTTCAAGTTCAGATTTCTGGAACCCTTGAAGCATCAGATGATCCATCAGATTACAAGGAGGACAGTAGACACTGGCTTAAATTTGGCAGTGTTAAAAAACTCTATGTTTATGGTGGTGGCACCATTAATGGAAACGGCAAGATATGGTGGGAAGACTCATGCAAAAGGAGCAAAAAGCGCGCTCTGACTTTTGATAATTGCGATGACTTGATAGTTGAAGACTTGAGCATAACAAATGCTCAACAAATCCACGTCTCATTTCAGGACTCTGTGAATGTTCAAGTTTCAGGCCTTAACGTGACAGCACCAGAGGATAGCCCCAACACTGATGGGATTCATGTCACCAATACGCAAAACATCCAAATCTCAAACTCTGTTATAGGAACTGGTGATGACTGTATATCTATTGTACATGGATCTAAAGATGTAGAAGCCAAAGATATTACCTGTGGACCGGGCCATGGTATCAGTATTGGAAGCTTGGGGGCGGGAAAATCCGAGGAATTTGTTTCAGGAATACGAGTGAATAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATCCAGTTTCAGAACATTGAAATGGACAATGTGAAGAACCCCATAATAATAAATCAGAATTACTGTGACAAGAAAAAGAAGCCATGCAAAAAACTGCTCTCAAAGAAATCTGCGATCCAAATCAAGAATGTGTTGTACCAGAACATAACGGGTACAAGTGCTTCTGATATAGCATTGAAGTTTGATTGCAGCGATAAATTTCCATGCCAGGAGATAGTGTTGCAGAACATAGACCTCGAATGTAAAGGTGGAGATGATGCTGAAGCTTTGTGTAACAATGTTGAATTGTCTTACTTAGGACACGTTAGGCCTCGTTGCAACTCAGAAACGAGAAAGGGTTCTACTATTATTAGTTCTATTTGGAAATACTTCTCATGGTATATA 1293 0.4006 DPLSSIYVDDSPSIDDGGTLLKNFIKQNTNVLSLNKLLDKRSSLKKVNVNDYGAEGNADTDDTEAFEKAWEEVCSSGEAILVVPEENYLLKPITFSGPCKPNVQVQISGTLEASDDPSDYKEDSRHWLKFGSVKKLYVYGGGTINGNGKIWWEDSCKRSKKRALTFDNCDDLIVEDLSITNAQQIHVSFQDSVNVQVSGLNVTAPEDSPNTDGIHVTNTQNIQISNSVIGTGDDCISIVHGSKDVEAKDITCGPGHGISIGSLGAGKSEEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMDNVKNPIIINQNYCDKKKKPCKKLLSKKSAIQIKNVLYQNITGTSASDIALKFDCSDKFPCQEIVLQNIDLECKGGDDAEALCNNVELSYLGHVRPRCNSETRKGSTIISSIWKYFSWYI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00299 431 ProSitePatterns Polygalacturonase active site. 249 262 IPR000743 GO:0004650|GO:0005975
Pste5g00299 431 SUPERFAMILY Pectin lyase-like 45 412 IPR011050 -
Pste5g00299 431 SMART pbh1 192 218 IPR006626 -
Pste5g00299 431 SMART pbh1 169 189 IPR006626 -
Pste5g00299 431 SMART pbh1 301 322 IPR006626 -
Pste5g00299 431 SMART pbh1 219 240 IPR006626 -
Pste5g00299 431 SMART pbh1 272 293 IPR006626 -
Pste5g00299 431 PANTHER - 47 397 - -
Pste5g00299 431 Pfam Glycosyl hydrolases family 28 80 398 IPR000743 GO:0004650|GO:0005975
Pste5g00299 431 FunFam Polygalacturonase QRT2 33 410 - -
Pste5g00299 431 Gene3D - 33 425 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00299 Pste-Chr5 2021229 2025459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00299 24 411 Glycoside Hydrolase AT2G41850 54.229 1.82e-133 389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00299 5 2021229 2025459 Pste5g00299 5 2021229 2025459 ECH
Pste7g00356 7 3386705 3391223 Pste5g00299 5 2021229 2025459 PCT