Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02927 TTTCATGCGGTGAGCGGTGCGCTTTCTTTTTATTTGATAGAAGATTTTGTCATTTGTGAACAGAGAGTGAGAGTGTATACGCAAAGTCAAGATGTGGCCATTCAGCAGCAAAGGTGCTTCCGGGTTACTCAAGGCATAGATGGAACTGGTCTCACTGCCATTGTCACAGGAGCATCCAGTGGTATTGGTGTTGAGACTACACGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAACAATACTTAAGGAGATCCCATCCGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCAATGGAGTCTGTCAAGAAATTTGCATCGGAGTTTAAGTCCTCTGGTCTTCCGCTGAACATCTTGATAAATAATGCAGGAATTATGGCATGTCCTTTCAATCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACTTAGGTCATTTTCTATTGACAAGTCTTTTGTTGGACACCATGAAGAAAACCTCACATGAAACTAAGAAAGAAGGAAGAGTTGTTAATGTCTCCTCTGAGGCTCACCGATTTGCATATTCTGAAGGAATAATTTTTGACAAAATTAATGATGAATCAAGTTACAATAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTTTCAAGGAAGATCAGGTGGATATTACTGCAAATTCTCTTCACCCAGGAACAATTGTCACCAATCTTTTCCGTTATAACAGTGCAGTGAATGGTCTAATTAATGTTGTCGGGAAATTCATGCTTAAAAATGCCCAGCAGGGAGCAGCTACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGCCAGTATTTTTCAGACAGTAATGTGGCCAAAACAACCTCACAGGGCACTGACACTGATTTGGCCAAGAAACTGTGGGATTTCAGCATGAATTTGACCAATGCAGAGATGTGGCCATTCTGCAGGAAAGGGGCTTCTGGGTTCTCATCATCATCCACTGCAGAACAAGTCACTGAAGGAATTGATGGAACTGGTCTCACTGCCATTGTCACAGGAGCATCCAGTGGTATTGGCACTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGTGTGAGAAACATGATTGCCGGTAAAGATGTCAAAGAAACAATACTTAAAGAGATTCCATCCGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCAATGGAGTCTGTCAAGAAATTTGCATCAGACTTTAAGTCCTCTGGTCTTCCATTGAACATCTTGATGAGTAATATCGTTTTCTGGTTATCTATGATTAAAAGAAACAATGCAGGAATTATGGCATGTCCTTTCAAGCTCTCCAAGGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTCCTGACAAATCTTTTGCTGGACACTATGAAAAAAACTTCGCGTGAAGTTAAGAAAGAAGTAAGAATTGTTAATGTCTCCTCTGAGGCTCACAAACTTACATATTCTGGAGGAATCCATTTTGACAAAATTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTGCATGCAAACGAACTTACAAGACGTCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAGTAGTTGCCACCAATCTAACCCGTCATATCTTTACAGTGAATGGTCTAGCTAGTATGATTGCAAGATTTTTCCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTACGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGCAAGTATTTTTCACACAGCAATCTGGCCAAAACAACCCCACAGGGCACTGACGCTGATTTGGCCAAGAAACTATGGGATTTCAGCATGAATTTGACCGAGTAAAAAATCCAAGTATTATTTTAGATATAACATATATACTTATAATGAAAAACATTAATTATATGAATTCCTGTAAGAGCATATTTGGGGATGTTTAAAATCTTCTTTTTTGTTTTCAGCTGAATTCCACTCATTTCAGCTGTTTTCCACTCATTTCAGCTGTTTATGAGAAAGGCAACATGTTTGGGAATTTTGATTATATCTGAAAACAACTTTTTTTTTATATGAAA 2213 0.3967 FHAVSGALSFYLIEDFVICEQRVRVYTQSQDVAIQQQRCFRVTQGIDGTGLTAIVTGASSGIGVETTRVLALRGVHVIMGVRNMLAAKDVKETILKEIPSAKVDAMELDLSSMESVKKFASEFKSSGLPLNILINNAGIMACPFNLSKDKIELQFATNHLGHFLLTSLLLDTMKKTSHETKKEGRVVNVSSEAHRFAYSEGIIFDKINDESSYNNWRAYGQSKLANILHANELTRRFKEDQVDITANSLHPGTIVTNLFRYNSAVNGLINVVGKFMLKNAQQGAATTCYVALHPQVKGISGQYFSDSNVAKTTSQGTDTDLAKKLWDFSMNLTNAEMWPFCRKGASGFSSSSTAEQVTEGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMIAGKDVKETILKEIPSAKVDAMELDLSSMESVKKFASDFKSSGLPLNILMSNIVFWLSMIKRNNAGIMACPFKLSKDKIELQFATNHIGHFLLTNLLLDTMKKTSREVKKEVRIVNVSSEAHKLTYSGGIHFDKINDESSYNNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGVVATNLTRHIFTVNGLASMIARFFLKNVQQGAATTCYVALHPQVKGISGKYFSHSNLAKTTPQGTDADLAKKLWDFSMNLTE 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02927 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 310 IPR036291 -
Pste4g02927 661 CDD retinol-DH_like_SDR_c_like 50 326 - -
Pste4g02927 661 CDD retinol-DH_like_SDR_c_like 365 653 - -
Pste4g02927 661 Gene3D - 40 337 - -
Pste4g02927 661 Gene3D - 359 661 - -
Pste4g02927 661 PANTHER RETINOL DEHYDROGENASE 346 660 - -
Pste4g02927 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 365 632 IPR036291 -
Pste4g02927 661 Pfam short chain dehydrogenase 52 199 IPR002347 -
Pste4g02927 661 Pfam short chain dehydrogenase 367 527 IPR002347 -
Pste4g02927 661 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
Pste4g02927 661 PRINTS Glucose/ribitol dehydrogenase family signature 178 194 IPR002347 -
Pste4g02927 661 PRINTS Glucose/ribitol dehydrogenase family signature 128 139 IPR002347 -
Pste4g02927 661 PRINTS Glucose/ribitol dehydrogenase family signature 52 69 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02927 Pste-Chr4 20640631 20653930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02927 369 609 Acyl Lipid Metabolism Gene Families AT1G62610 25.984 5.14e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02927 4 20640631 20653930 Pste4g02927 4 20640631 20653930 ECH
Pste4g02927 4 20640631 20653930 Pste9g01158 9 9103611 9123930 PCT