Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02907 CGGCTACCCCTTCTCTCCTAAACAAAGAAGGAGAAAATTATTTAATAACTTTATCACACCTTCTTCTGTTTCAGTGTTTATTATGTGAAGGTTGAGTGAAAATGGGAGGTGGTGGCCGAAGCAGTGGTCCTGTGAAACAGAGAGACAACGTTGAAGGGAAGAACAAGACGAAAAACCAAACCCCAAAACGTGTGCCACACGAAAAACCACCATTCACACTTAGCCAAATTAAGAAAGCAATTCCACTACACTGTTTCCAACGTTCACTCCTTCGTTCATTCTCGTATGTCTTCTACGACCTCATCGTAGCCTCAATCCTTGCCTATGCAGCAGTAAATTACATCCCTACCCTTCCCCACAACCTCTACCTCTTAGCCTGGCCCCTCTACTGGGCCATCCAAGGTAGCGTCCTCACAGGGGTGTGGGTGATTGCACACGAGTGTGGCCACCACGCCTTCAGCGACTACCAATGGATCGACGACACGGTGGGTCTGGTCCTCCACTCCTTCCTCCTCGTTCCTTATTTCTCATGGAAATACAGCCACCGGCGCCACCACTCCAACACCGGTTCCCTCGAACGCGACGAGGTTTTTGTCCCAAAAACCAAGTCCAACGTTTCTTGGTATTCAAGGTTCTTGAGCAATCCACCAGGGAGAGTTCTCACACTTTTCATCACCCTCACATTGGGTTGGCCTCTCTACTTGGCTTTCAACGTTTCCGGCAGAAAATACGACAAATTCGCGTGCCACTTCGACCCTTATGGCCCCATTTACTCCGACCGTGAAAGACTCCAAATTTATGTCTCCGACGCTGGAATTTTTGCCATGTTCTATGGAATTTACAAGCTTGTTTTGGCTAAAAGCCTTGTTTGGGTTGTTTGTGTTTATGGGGTGCCTTTGTTGGTGGTGAATGGTTTTCTAGTGTTGATCACTTTCTTGCAACACACTCACCCTGCGGTTCCTCACTACGATTCCACCGAGTGGGATTGGTTGAGAGGTGCATTGGCCACTGTGGACAGAAGCTATGGGATTTTGAACAAGGTTCTGCATAACATCACAGACACACACGTGGCTCATCATTTGTTTTCCACAATGCCTCATTATCATGCAATGGAGGCTACCAAGGCCATAAAACCAGTTTTGGGAGAGTATTATCACTTTGATGGGACTCCTATTTACAAGGCAATGTGGAGAGAAGCAAAAGAGTGCATGTATGTTGAATCAGATGAAGGGTCTCAGGAGAAAGGTGTTTATTGGTACAGTAATAAGCTGTAAGGAATAGAGTTTGCAACATTCTTGTGTCTATCATGAGATGGAGTTGGAGATGATAGAGAGTTTAGGTTTTGGTTATTGTCTACCTCTAATGTTGTTTGTTTATGTTTCTTATAGAATAATTTTCCTAATTAGTGGTGATTAATGTTGGAAGCAGAAAAGGAGATTCTGTATCCTTATGCTGTTATGCATGGTGGGTTGTAATCAGTTTTTAGCTTCACATAATGGTTGGAAACTAATTAATTGTAGTTGTTTCCAATTAATTTATAAAGAAAGGGGAATTTTGTTCTTGCT 1565 0.4403 MGGGGRSSGPVKQRDNVEGKNKTKNQTPKRVPHEKPPFTLSQIKKAIPLHCFQRSLLRSFSYVFYDLIVASILAYAAVNYIPTLPHNLYLLAWPLYWAIQGSVLTGVWVIAHECGHHAFSDYQWIDDTVGLVLHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKTKSNVSWYSRFLSNPPGRVLTLFITLTLGWPLYLAFNVSGRKYDKFACHFDPYGPIYSDRERLQIYVSDAGIFAMFYGIYKLVLAKSLVWVVCVYGVPLLVVNGFLVLITFLQHTHPAVPHYDSTEWDWLRGALATVDRSYGILNKVLHNITDTHVAHHLFSTMPHYHAMEATKAIKPVLGEYYHFDGTPIYKAMWREAKECMYVESDEGSQEKGVYWYSNKL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02907 390 CDD Delta12-FADS-like 54 336 - -
Pste4g02907 390 Pfam Fatty acid desaturase 92 352 IPR005804 GO:0006629
Pste4g02907 390 Pfam Domain of unknown function (DUF3474) 15 74 IPR021863 GO:0016717
Pste4g02907 390 MobiDBLite consensus disorder prediction 1 36 - -
Pste4g02907 390 MobiDBLite consensus disorder prediction 13 31 - -
Pste4g02907 390 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 21 389 IPR012171 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02907 Pste-Chr4 20521512 20527729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02907 1 390 Lipid Metabolism Gene Families AT3G12120 70.000 0.0 588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02907 4 20521512 20527729 Pste4g02907 4 20521512 20527729 ECH
Pste5g00535 5 3497623 3498794 Pste4g02907 4 20521512 20527729 PCT