Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02212 GCCCATTTGTCCAAAAGCGCACAGCCGAGCTGCACTGCACTGCCCTGCCGTAGCATACGAAAAACCTCTGAGCTTTCTCTTCTGTTTGTTGATTTCCTTCTTTGCTGCAATGTTAAGCCCCTCGAGCGCCGGCGGTCGCAGGGAAGTTAGAATCGCCGTCGTGGGTGACGGAGGCAGCGGGAAAACCACACTGATAGCCGCAATGGTGTCGGAGTCTTTCCCCATGTCTGTTCCGCCCGTGCTTCCCCCAACTCGCCTGCCCCATAATCTCTTCCCCGATTCTGTTCCTCTTACTCTCATCGACACACCTTCCAGCTTGGCAAAACAAGGCACTCGCAATGAAGAATTGAAGCGAGCTGATGCGGTGGTTTTATCCTATGCTTGTAATGAACCGGTGAGCTTTGAGCGTGTTAGTACTTACTGGCTCCCTGAACTGCAGAAGTTGGAGGTTAAGGCACCTGTGATTGTCGTTGGTTGCAAGCTTGACCTGCGGGATGAAAACCAGCTAGTTAGCTTAGAGAGTCTCACCACTCATATAATGCAACAATTCACTGAAATTGTCCCTCAAGTTTTTTATTTTGCCCAAAAAGCAGTACTGCATCCTGTAGATCCATTGTTTGATTATAAAAGACATGCTTTGACAGATCGATGTCTGAGGGCGTTAAGAAGAATATTTGTTCTTTGTGATCATGACATGGATGGTGCCCTCAATGATGAAGAACTAAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAGCCGTCTGAAATAGCAAAAGTCAAAACAATTGTAGAGCAGAAAGTACCAGAAGGAGTCAACTCTGTTGGTCTTACCTTTCCTGGCTTTATTTATGTCCATAACATGTTTCTAAAGAAAGGGCAAACAGAGACATTGTGGGCTGTTCTAAGAAAGTTTGGATATGATAATCATTTAAAACTCCAGGATGATTTCCTTCCAGTTCCATCTAAGCAGGCTTCTGATCAGAGTGTGGAGCTGACAGATGAAGCTGTTGAGTTTTTGAAGAGTACCTTTCAATTGTTAGATACAGATAAAGATCAATATCTACGACCTGATGAAGTTGATAAGCTATTTGATACTGCTCCAGAAAGTCCATGGAATGATACTCCATATAAGGATGCAGTAGAGAAAACAGATATGGGCTATACCTCTCTGAATGGATTTTTGTCCCAGTGGGCACTCATGACATTACTTGATCCACAACGTAGCTTGGCTAATTTGATTTACATTGGATATAATGGTAATCCTGCTGCAGCCCTCCGTGTCACTCGTAGAAGATCAGTAGATCGGAAGAAGCAAACAGCTGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTGTAAACATGCTGGGAAATCTGCTTTGCTGTATTCATTACTGGGAAGGCCTTTCTCAAACAATTATACTCCAACAACAGTTGAAAAGTATGCAGCAAATGTCATTGAACTAAAAGGGGTAACGAGGAAAACTCTCATATTGCGTGAGATACCTGAGGATGGATTATTGGAATTTTTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAAATGAATATTCATGGAAGAAATCCAGAGATTTACTCGAGAAGGTTGTTAGACAAGGAGAATTAACTGGTTATAGAACCCCTTGTCTCCTTATCGCTGCTAAGGATGACTTAACTCCATTCCCAAGGGCTGTACTAGATTCAGTTAAGGTTACTCAGGAATTGGAAATAAAGACACCTATTCACGTAAGTATGAAATTAGGCGATTCAGGTAATGTGTATAATAAAATTATCAATGCTGCGGTGCACCCTCATTTGAGCATTCCAGAAACTGAGATTGCACGGAGAAAGAAGCAACACTACCAGTTTCTTCATCACACACTTATTTTTTCCCTAGTTGGGGCTGCTATGGCAATTGCTGGTTTCACAGCTTGCCGCGTGCGAACAGTGAAGAAGAATACTACTACTGCTTAGCAATCAAGCAACCATTATATTATCGCTTCTAACTTACTAACTATTAACCTTGGGCTACCTAAAGTTAAATATTCTATGTATAGTAATTATTAATCACATTCATTGTTGTTGTACGGAATGACGGATGTTTTACAAGCCTTCTTTAATGTGATTATATTTATTTTTTTTGGTTTTCAATTGTGTTTTCATTGTGGACACTTGATCAAATAAAAC 2218 0.4139 MLSPSSAGGRREVRIAVVGDGGSGKTTLIAAMVSESFPMSVPPVLPPTRLPHNLFPDSVPLTLIDTPSSLAKQGTRNEELKRADAVVLSYACNEPVSFERVSTYWLPELQKLEVKAPVIVVGCKLDLRDENQLVSLESLTTHIMQQFTEIVPQVFYFAQKAVLHPVDPLFDYKRHALTDRCLRALRRIFVLCDHDMDGALNDEELNEFQVRCFNAPLQPSEIAKVKTIVEQKVPEGVNSVGLTFPGFIYVHNMFLKKGQTETLWAVLRKFGYDNHLKLQDDFLPVPSKQASDQSVELTDEAVEFLKSTFQLLDTDKDQYLRPDEVDKLFDTAPESPWNDTPYKDAVEKTDMGYTSLNGFLSQWALMTLLDPQRSLANLIYIGYNGNPAAALRVTRRRSVDRKKQTAERNVFQCYVFGCKHAGKSALLYSLLGRPFSNNYTPTTVEKYAANVIELKGVTRKTLILREIPEDGLLEFLSNQDCLAACDVAVFVYDSSNEYSWKKSRDLLEKVVRQGELTGYRTPCLLIAAKDDLTPFPRAVLDSVKVTQELEIKTPIHVSMKLGDSGNVYNKIINAAVHPHLSIPETEIARRKKQHYQFLHHTLIFSLVGAAMAIAGFTACRVRTVKKNTTTA 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02212 631 ProSitePatterns EF-hand calcium-binding domain. 193 205 IPR018247 -
Pste4g02212 631 SMART rho_sub_3 15 165 IPR001806 GO:0003924|GO:0005525
Pste4g02212 631 Gene3D - 9 167 IPR027417 -
Pste4g02212 631 Gene3D - 474 576 IPR027417 -
Pste4g02212 631 CDD Miro2 407 586 - -
Pste4g02212 631 PIRSF Miro 9 630 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Pste4g02212 631 PRINTS Transforming protein P21 ras signature 13 34 - -
Pste4g02212 631 PRINTS Transforming protein P21 ras signature 114 127 - -
Pste4g02212 631 ProSiteProfiles Miro domain profile. 10 179 IPR020860 GO:0003924|GO:0005525
Pste4g02212 631 Pfam EF hand associated 337 404 IPR013566 -
Pste4g02212 631 PANTHER RHO FAMILY GTPASE 11 138 IPR003578 GO:0005525|GO:0007264
Pste4g02212 631 Pfam Ras family 415 534 IPR001806 GO:0003924|GO:0005525
Pste4g02212 631 Pfam Ras family 15 137 IPR001806 GO:0003924|GO:0005525
Pste4g02212 631 Gene3D - 172 276 - -
Pste4g02212 631 FunFam Mitochondrial Rho GTPase 172 276 - -
Pste4g02212 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 197 IPR027417 -
Pste4g02212 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 582 IPR027417 -
Pste4g02212 631 FunFam Mitochondrial Rho GTPase 475 576 - -
Pste4g02212 631 ProSiteProfiles Miro domain profile. 408 577 IPR020860 GO:0003924|GO:0005525
Pste4g02212 631 ProSiteProfiles EF-hand calcium-binding domain profile. 300 335 IPR002048 GO:0005509
Pste4g02212 631 Gene3D - 278 468 - -
Pste4g02212 631 FunFam Mitochondrial Rho GTPase 278 468 - -
Pste4g02212 631 Pfam EF hand associated 216 300 IPR013567 -
Pste4g02212 631 SUPERFAMILY EF-hand 168 363 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02212 Pste-Chr4 16061141 16068600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02212 5 628 EF-hand Containing Proteins AT3G63150 55.573 0.0 754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00851 5 5393791 5403495 Pste4g02212 4 16061141 16068600 PCT