Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02010 ATGCCTACCGGCCCCCTTCACCTGGTTACTGGCCTAGTTTCAAATTCAGGCCTGTTAACTTCTACAGAGGGAAGTGGCTTCAAATCAGTTCGTCCATTCCGATCCGGGTACTTTGGGGCTTCCATTAAGCTCCATCCTGGCTATACTGCGGGAGTTATAACAGCTTTCTATCTTTCTAATAATGAGGCACATCCGGGCTTCCATGATGAAGTGGATATTGAGTTTCTTGGGACAACATTTGGAAAACCTTATACTTTACAAACCAATGTTTATATAAGAGGGAGTGGGGATGACATAATTATTGGCAGAGAAATAAAGTTCCACCTTTGGTTTGATCCTACCCAAGATTTTCATCATTATGCTATACTTTGGAGTCCTAAGGAAATAATATTCCTTGTTGATGATATTCCTATAAGAAGGTATCCACGGAAGAGTGCTGCAACCTTTCCACTGAGACCAATGTGGCTATATGGTTCAATTTGGGATGCCTCATCGTGGGCAACAGGAGATGGAAAGTACAAAGCTGATTACAGATATCAACCTTTTGTTGCAAAGTACACCAACTTCAAGGCTGGTGGTTGCTCAGCCTATGCCTCTCGTTGGTGTCGTCCAGTCTCAGCCTCACCATATCGTTCTGGTGGTTTGACCAGACGCCAATATTGGGCCATGAGATGGGTGCAAAAATACCACATGGTCTATAACTATTGCCAAGACCCCAAAAGAGACCATAGACTAACACCTGAGTGTAGGGGGTAACACTTTCAAAAGTGAATCAATTGACTCTTCTACGATAAAATTCTGCCATATTTGGAATACTAAACTATTTGTTGGTTTATATGAATAAAATAATTATGTAATTCGTTACACCAAATCCGACTAACTGTGATGTGTTTAATCTGGTAAAGTAAATTTTAAAGTAAGACCGGAGTTGGTGTAACAAAGTGCATAGTTTTTTTTACTTATATGGAACAATGATTTTTACCACTTTGAGTGTTGCATAATTTTAGCGTAGAAGAACCAAGGTCTCTCTAGTCACTACTCTTTGTGTGCTTTGTTACATATGTTGTGTGATCTTTTAGAAAGTCAATTTTTTATGGGGATAACATGATATGGGGGCATTCCTTGACAACTACATCGATGCAAGTGTACGAGTCCAAGGGTTCTCCTAAACAGAAGAAATTTGGTAAGATTGTGTAGATTTTTGGCTTTGTTATCTTTCTCTTCTCTAGGTTAGAACAAGGAAAAAGGAGGAAGAAAGAGAAATTATAACATTAATGTGTAATGAAGAGAGATTAGGCCTAGTGGTATTGGACAGGCAGCCAGCATGAGTGGGAATATTATAAGCACATTCTTCATTTTATAATAATGC 1369 0.3923 MPTGPLHLVTGLVSNSGLLTSTEGSGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDDIIIGREIKFHLWFDPTQDFHHYAILWSPKEIIFLVDDIPIRRYPRKSAATFPLRPMWLYGSIWDASSWATGDGKYKADYRYQPFVAKYTNFKAGGCSAYASRWCRPVSASPYRSGGLTRRQYWAMRWVQKYHMVYNYCQDPKRDHRLTPECRG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02010 251 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 186 IPR000757 GO:0004553|GO:0005975
Pste4g02010 251 Pfam Glycosyl hydrolases family 16 20 178 IPR000757 GO:0004553|GO:0005975
Pste4g02010 251 Gene3D - 11 249 - -
Pste4g02010 251 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 19 249 IPR044791 GO:0004553
Pste4g02010 251 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 237 IPR013320 -
Pste4g02010 251 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 211 249 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pste4g02010 251 PIRSF EndGlu_transf 14 251 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02010 Pste-Chr4 14871301 14873810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02010 19 249 Glycoside Hydrolase AT3G44990 70.130 2.64e-118 338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02010 4 14871301 14873810 Pste4g02010 4 14871301 14873810 ECH
Pste5g02015 5 12798686 12801816 Pste4g02010 4 14871301 14873810 PCT