Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01820 ATGCAGTCCTCAACGGATAAGACGCCGCCCATCCAACGACTCAAATTACTTTCTAACCTCACTCAAACTCCTTATTCTCCTCTCTCTGCCAGCTTCAACACCACGACCTCGCCCATCCAATGGCGTCTCAGATCTAACTCTAACTGCTTTGCTTTGTTGCGAGGCATCGTGTTCCTATTATTATTCTCCCGGAAAACGACACCATTTGACATGCCCCCCAGAATAGCCTACTCCTTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATCCACTGCGACAAGGACCGCGGCTCCATCTCCCTCGTATGTAAGTCCTGGTACGAGATCGAGCGATGGTGCCGCCGGCGAGTATTCGTCGGAAACTGCTACGCCCTCTCTCCGCCCACCCTCGTCACCCGCTTCCCCAAAGTGAGATCCATCGCCATCAAGGGCAAACCCCACTTCGCCGACTTCAATTTGGTCCCCGACGGTTGGGGCGCTTACGTCTCCCCCTGGATCAAGGCCATGGCCGTTGCCTACCCCTGCCTTCAGGAGATCAGGCTCAAGCGAATGGTCATCACCGATGAATGCTTGGACCTTATTGCCAAATCCTTTAAGAACTTCAGGGTCTTGGTCCTCACCTCTTGCGAGGGTTTCACCACCGATGGTCTTGCTGCCATTGCCGCCAATTGCAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAGGTGGACGATATTTGTGGGCATTGGCTTAGCCATTTTCCTGATTCGTACACATCATTGGTTTCCCTTAACATCTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCGCTAGAGCGTCTGGTTAGTAGGTGTCCCAACCTGCAGACACTTCGCCTCAACCGGGCTGTGCCTCTGGACAGGTTGGCCAATCTTCTTCGCGCCGCTCCTCAGTTGGTTGAGTTGGGCACTGGAACTTACACGACTGAGATGCGACCGGAGGTCTTCTCAAACCTGGCGGAGGCATTTTCTGGGTGCAAGCAATTGAAGAGCTTGTCTGGATTTTGGGATGTGCTCCCGTCCTACCTTCCAGCTGTCTACCCTGTCTGCTCCAACCTGACATCACTAAACTTGAGTTATGCGACTATTCAAAGCCCTGATCTTATCAAGCTTGTTAGTCAGTGTGAGAGTTTGCAGCGTTTATGGGTTCTGGATTACATAGAAGATGATGGCCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGAGAGTTGAGGGTGTTTCCATCTGACCCGTTTGGGTTAGAACCAAATGTAGCGTTGACAGAGCAGGGCCTTGTTTCTGTCTCTGAAGGCTGCCCCAAGCTTCAGTCAGTTCTATATTTTTGTCGCCAAATGTCTAATGCTGCCTTACATACAATTGCCAGGAACAGGCCTAATATGACTCGTTTTAGATTGTGCATTATTGAACCCAAAGCTCCTGACTATCTTACCCATCAACCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCGGCGCCTTTCCCTTTCTGGGCTTCTCACCGACCGTGTTTTTGAGTATATTGGGACTTACGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGTGATTTGGGGCTCCATCATGTGTTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTAGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTACGAAGCATGTAAACTGCTGGGTCAGAAAATGCCAAGACTTAATGTTGAAGTGATTGATGAAAGAGGACCTCCAGATTCTAGGCCAGACAGTAGTCCTGTTGAGAAGCTATACATATACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGGAAGATGATTCTGCATTAAGGATTTCTTGAGTGATTGTGCTCTGGAATGAACCAATGGAATTTATGAGCATTTGATGCAAGAATTGTTGGTGCAGAGTTGATTGGTGCTGTGGAGTAAACAATCGGAATGAGAATGACTATATATGAGACAACTGAGTCTCCTGACGCATGTGAACCGAGGAATGGCTCTACCGGTGGAAAGGTTTAAGATTGTTTCCATGGTTTTTAATTAAATTTGCATCCATTTTTTGGTTGCCTACGTTGAGCCTGATAAAGTTTCTCGTTCAACATAGGGTTCAAGCTGAAGATAGTATACATGCAACTTTACCAGTGAGGAACCTGTAATGTAATGGTATATATAATGGGTAACCTGCATGATGTCACCAATCTCCATTATTAAAATGAAGTTCGCTTTTCACTCAGTTTTCAGGATTTGTTTTAGGTTCTTAAATTTTGATAATTTGGATGTTTAGAAATGGTAAAATAGTATTTTGATGTGTAACTATTATATGTATAAAAGGTAATTTTATTTATCTTTTTAGAGTAGTTTTTGAAGTAAAAGTAATTATTAGTCTTAAAAGAAATATTCATTCCAT 2534 0.4621 MQSSTDKTPPIQRLKLLSNLTQTPYSPLSASFNTTTSPIQWRLRSNSNCFALLRGIVFLLLFSRKTTPFDMPPRIAYSFPEEVLEHVFSFIHCDKDRGSISLVCKSWYEIERWCRRRVFVGNCYALSPPTLVTRFPKVRSIAIKGKPHFADFNLVPDGWGAYVSPWIKAMAVAYPCLQEIRLKRMVITDECLDLIAKSFKNFRVLVLTSCEGFTTDGLAAIAANCRNLRELELRESEVDDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRAAPQLVELGTGTYTTEMRPEVFSNLAEAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSNLTSLNLSYATIQSPDLIKLVSQCESLQRLWVLDYIEDDGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNMTRFRLCIIEPKAPDYLTHQPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYEACKLLGQKMPRLNVEVIDERGPPDSRPDSSPVEKLYIYRTVSGPRLDMPGYVWRMEDDSALRIS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01820 655 SUPERFAMILY F-box domain 76 113 IPR036047 GO:0005515
Pste4g01820 655 Gene3D - 71 115 - -
Pste4g01820 655 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 158 607 - -
Pste4g01820 655 FunFam Transport inhibitor response 1 116 646 - -
Pste4g01820 655 Gene3D Ribonuclease Inhibitor 116 646 IPR032675 -
Pste4g01820 655 FunFam Transport inhibitor response 1 75 115 - -
Pste4g01820 655 Pfam F-box 77 117 IPR041567 -
Pste4g01820 655 SMART LRR_CC_2 501 524 IPR006553 -
Pste4g01820 655 SMART LRR_CC_2 441 465 IPR006553 -
Pste4g01820 655 SMART LRR_CC_2 358 382 IPR006553 -
Pste4g01820 655 SMART LRR_CC_2 199 224 IPR006553 -
Pste4g01820 655 SMART LRR_CC_2 550 574 IPR006553 -
Pste4g01820 655 Pfam Transport inhibitor response 1 protein domain 136 182 IPR041101 -
Pste4g01820 655 SUPERFAMILY RNI-like 102 604 - -
Pste4g01820 655 CDD F-box_AtTIR1-like 78 115 - -
Pste4g01820 655 SMART fbox_2 79 120 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01820 Pste-Chr4 13579952 13583539 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01820 4 13579952 13583539 Pste4g01820 4 13579952 13583539 ECH
Pste5g02605 5 18345538 18348599 Pste4g01820 4 13579952 13583539 PCT