Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03524 AAAAGTCACACGTAAACGTGAACTAAGAGGTGTTCCACGATACTATAGAACAAGTTTTCTCATTCATAACCGCCATTCTAATTGTTACATCTATCTTTTGCTGTTCCACTCTCACCAATCTCTTGGAGGTCATGGATTATCATTATATTCTTGGAGGGATCATGGCTTGTAGTTTTGCATTTTTGTATGTTGTGTACAGCTTTGGAGCAAAGAAGGTCACTGATTCAAGTTCAATACATGTAAAAAGAAATAAATATGCTAAGACATCATCAGAGAATGGAATATGTTCACATGAGGATGAAGGAAATCCTGACATCATCATTGTGGGTGCTGGGGTTGCAGGTGCAGCTCTTGCTTACACACTAGGAAAGGATGGACGACAAGTGCATGTAATTGAAAGGGATTTAAGTGAACCTGACAGGATCGTGGATTGCGTGGATGAAATTGATGCCCAGCAAGTTTTTGGCTATGCTCTGTTCAAGGATGGCAAAAATACCAAGCTGTCTTATCCCTTGGAAAAATTTAGCTCTGATGTTTCTGGGAGAAGCTTTTATAATGGCCGTTTCATACAGAGAATGAGAGAAAAGGCTGCATCTCTTTCAAATGTAAAATTAGAACAAGGAACTGTCACATCTCTACTTGAAGAAAAAGGAACCATCGCCGGGGTGCACTACAAAACCAAAAGTGGAGAAGAGTTCACAGCAAAGGCTCCACTCACCATAGTATGTGATGGTTGTTTTTCCAACTTGAGGCGTTCTCTTTGCAATCCTAAGAATTGTAATCTTCCATATGCAAATCATGGACACGTCATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAATTACCTTCCCTTGGTAGTGGTGAAATGGCCCGTTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCTCCAGAGCTGTATGATTCTTTTGTTGCAGCTGTTGACAAAGGAAGTATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTTATCCCACACCTGGTGCCCTTTTAATGGGAGATGCCTTCAATATGCGTCACCCTTTAACAGGAGGAGGAATGACAGTGGTTTTATCTGATATTGTTGTTCTAAGAAATCTACTTAAACCATTGCATAATCTGCATGATGCTTCTGCTCTTTGCAGATACCTTGAATCATTCTACACCCTACGCAAGCCAGTGGCATCTACGATTAACACATTAGCTGGGGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGTCAAGCATGTTTTGATTACTTGAGCCTTGGAGGTGTTTTCTCAGATGGACCGATAGCTCTACTTTCTGGTCTCAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTTGCTGTCGCCATATATGGTGTTGGTCGCCTGCTGATACCATTTCCTTCTCCAAAACGGATGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAAGCATCATTTTCCCCATTATTAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCAGCAACCGTGCCAGCATATTATAGAACCCCTCCTGTCCATTGAACACCCATGAAGGAAAGC 1631 0.4206 MDYHYILGGIMACSFAFLYVVYSFGAKKVTDSSSIHVKRNKYAKTSSENGICSHEDEGNPDIIIVGAGVAGAALAYTLGKDGRQVHVIERDLSEPDRIVDCVDEIDAQQVFGYALFKDGKNTKLSYPLEKFSSDVSGRSFYNGRFIQRMREKAASLSNVKLEQGTVTSLLEEKGTIAGVHYKTKSGEEFTAKAPLTIVCDGCFSNLRRSLCNPKNCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGSGEMARYLKTVVAPQVPPELYDSFVAAVDKGSIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVVLSDIVVLRNLLKPLHNLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASSIIFPIIKAEGVRQMFFPATVPAYYRTPPVH 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03524 493 PANTHER SQUALENE MONOOXYGENASE 13 491 IPR040125 GO:0004506|GO:0016126
Pste3g03524 493 Gene3D - 269 388 IPR036188 -
Pste3g03524 493 Pfam Squalene epoxidase 192 452 IPR013698 GO:0004506|GO:0016020|GO:0050660
Pste3g03524 493 Gene3D - 57 228 IPR036188 -
Pste3g03524 493 FunFam Squalene monooxygenase 2 54 403 - -
Pste3g03524 493 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Pste3g03524 493 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Pste3g03524 493 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 322 338 - -
Pste3g03524 493 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 322 - -
Pste3g03524 493 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 192 207 - -
Pste3g03524 493 SUPERFAMILY FAD/NAD(P)-binding domain 60 404 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03524 Pste-Chr3 27700275 27703916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03524 39 491 Miscellaneous Gene Families AT1G58440 72.727 0.0 723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03524 3 27700275 27703916 Pste3g03524 3 27700275 27703916 ECH
Pste3g03524 3 27700275 27703916 Pste2g01817 2 18539129 18542019 PCT