Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03510 ATGTTTGGTGTTGGAGGATTAATCCATAGGGGCCATAAGATAAAAGGGACAGTGGTGTTGATGCGGAAGAATGTGTTGGACGTGAATAGCATAACGAGTGTTGGGGGAGTTATAGGTGAAGGTTTGAACATACTTGGTTCAACACTCGATACTCTCACTGCCTTCTTGGGCCGCTCTGTCTCTCTCCAGCTTATTAGCGCTACCAAACCTGATGCCAACGGAAAAGGAAAACTTGGAAAGCCTACCTTTTTGGAAGGTGTCATTACTTCCTTGCCAACTTTGCGAGCAGGCCAATCTGCATTCAAAATTCATTTTGAATGGGATGTTGACAGTGGAATTCCTGGAGCATTTTATATCAAGAATTTTATGCAAACCGAGTTCTTCCTTGTCAGTTTGACTCTTGAAGACATTCCAAACCATGGAAGCATCCACTTTGTTTGCAACTCGTGGATTTACAATGCCAAACACTTCAAAAGTGATCGCATTTTTTTTGCCAACCAGACATATCTTCCAAGTGAAACACCAGCTCCATTAGTCAAGTACAGAGAAGAAGAGTTGCATAATTTAAGAGGAGATGGAACTGGGGAACGCAGAGAGTGGGAAAGGATCTATGATTATGATGTTTACAATGATTTAGGTGATCCAGATAGAGGTGAAAAGCACGCCCGTCCTATTCTTGGAGGGTCTGACACCTTGCCTTATCCTCGTAGGGGGAGAACTGGTAGAAGACCAACAAGGAAAGATCCCAACAGTGAGAGTAGGAGCAACGATGTTTATATTCCAAGAGATGAGGCTTTCGGACACTTGAAGTCATCAGACTTTCTTACTTATGGACTGAAATCCATATCTCAAAATGTTCTTCCAGCATTGCAATCTGTTTTTGATTTGAATTTCACACCCCATGAGTTTGATAGCTTTGATGAAATTCATGGACTCTATTCGGGTGGGATTAAGCTGCCAACAGATTTCTTTAGCAAGATTAGTCCAGTACCCGTGCTCAAGGAAATCCTTCGGACTGATGAGGAGCAGACCCTTAAGTTTCCCCCTCCTAAAGTAATTCAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCGGGTGTAAATCCAAACCTGATTCGTTGTCTTCATGAGTTCCCTCCAGGAAGCAAGCTAGATAGCCAAGTTTATGGCGATCATAGTAGTCAAATAACCAAAGACCACCTAGAGCCTAACTTAGAAGGGCTCAATGTATATGAGGCAATTGAAAGCAAGAGATTGTTCCTACTAGATCATCATGACTCAATCATGCCATATTTAAGGCGAATAAACGCAACCTTGACAAAGGCTTATGCTAGCAGAACCATCCTTTTCCTGAAGAACGACCGAACTTTAAGGCCACTTGCCATAGAATTGAGTTTACCACATCCTCAGGGAGATAAATATGGTGTTATTAGTCAAGTTTTTCTACCTGCAGATGAAGGTGTTGAAAGTAATATTTGGCTGCTCGCAAAGGCTTATGTAATTGTGAATGACTCCTGCTATCATCAACTCGTCAGCCATTGGTTAAAAACTCATGCAGTTATTGAGCCTTTTATCATAGCAACAAACAGGCATCTAAGCGTTGTTCACCCTATTTATAAACTTCTGCATCCTCACTATCGTGACACCATGAACATAAATGCCCTTGCTCGACAATCACTGGTGAACGACGGTGGCATTATAGAACAAACATTTTTGTGGGGAAGGTATTCTATGGAAATGTCTGCTGCAATTTACAAGGATTGGGTTTTCACAGATCAAGCATTGCCTGCTGATCTTATAAAAAGAGGAATGGCAATTGAGGATCCTGCATGCCCTCATGGCATTCGCCTTGTGATTGAGGACTATCCTTATGCTGTTGATGGACTTGAGATATGGGATGCTATCAAGACATGGGTCCATGAATATGTTTTCTTATACTACAAATCAGATGACACACTTAGAGAAGATTCGGAACTCCAAATGTGGTGGAAAGAAGTAGTAGAGGTAGGTCATGGTGACAAGAAAAATGAGGCATGGTGGCCTAAGATGCAAAGGCGTGAAGAGGTAGTTGAAGCTTGCAGTATTGTCATATGGATTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTTAATCTTAAACCGTCCAACTCTTAGTAGGCGATTCATACCTGAGAAAGGTTCTGCTGAGTATGAGGAGCTGAGGAAGAGCCCTCAGAAGGCTTACTTGAAGACTATTACACCAAAGTTTCAGACCCTTGTTGACCTTTCTGTTATAGAAATCTTGTCAAGACATGCCTCTGATGAGGTGTACCTTGGGGAGAGGGACCATCCAAATTGGACATCTGATACAAGGGCATTAGAGGCTTTTAAAAGCTTTGGAAACAAGCTGGCAGAAATTGAGAATAAACTCTCCCAGAGAAACAATGATGAGAAACTCAGAAACCGCCATGGACCAGTTATGATGCCTTACACCCTGCTTTTCCCATCTAGCAAGGAAGGATTAACTTTCAGAGGAATTCCTAACAGTATCTCTATCTGA 2580 0.4202 MFGVGGLIHRGHKIKGTVVLMRKNVLDVNSITSVGGVIGEGLNILGSTLDTLTAFLGRSVSLQLISATKPDANGKGKLGKPTFLEGVITSLPTLRAGQSAFKIHFEWDVDSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKHFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERREWERIYDYDVYNDLGDPDRGEKHARPILGGSDTLPYPRRGRTGRRPTRKDPNSESRSNDVYIPRDEAFGHLKSSDFLTYGLKSISQNVLPALQSVFDLNFTPHEFDSFDEIHGLYSGGIKLPTDFFSKISPVPVLKEILRTDEEQTLKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLHEFPPGSKLDSQVYGDHSSQITKDHLEPNLEGLNVYEAIESKRLFLLDHHDSIMPYLRRINATLTKAYASRTILFLKNDRTLRPLAIELSLPHPQGDKYGVISQVFLPADEGVESNIWLLAKAYVIVNDSCYHQLVSHWLKTHAVIEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINALARQSLVNDGGIIEQTFLWGRYSMEMSAAIYKDWVFTDQALPADLIKRGMAIEDPACPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDSELQMWWKEVVEVGHGDKKNEAWWPKMQRREEVVEACSIVIWIASALHAAVNFGQYPYGGLILNRPTLSRRFIPEKGSAEYEELRKSPQKAYLKTITPKFQTLVDLSVIEILSRHASDEVYLGERDHPNWTSDTRALEAFKSFGNKLAEIENKLSQRNNDEKLRNRHGPVMMPYTLLFPSSKEGLTFRGIPNSISI 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03510 859 MobiDBLite consensus disorder prediction 244 259 - -
Pste3g03510 859 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 169 IPR036392 GO:0005515
Pste3g03510 859 FunFam Lipoxygenase 359 492 - -
Pste3g03510 859 PRINTS Plant lipoxygenase signature 384 403 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 300 321 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 772 786 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 345 361 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 233 252 IPR001246 GO:0016491
Pste3g03510 859 PRINTS Plant lipoxygenase signature 450 474 IPR001246 GO:0016491
Pste3g03510 859 MobiDBLite consensus disorder prediction 215 259 - -
Pste3g03510 859 SUPERFAMILY Lipoxigenase 170 859 IPR036226 -
Pste3g03510 859 SMART LH2_4 12 166 IPR001024 GO:0005515
Pste3g03510 859 Pfam Lipoxygenase 178 842 IPR013819 GO:0016702|GO:0046872
Pste3g03510 859 Gene3D PLAT/LH2 domain 4 169 - -
Pste3g03510 859 ProSiteProfiles PLAT domain profile. 40 165 IPR001024 GO:0005515
Pste3g03510 859 PANTHER LIPOXYGENASE 12 859 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pste3g03510 859 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Pste3g03510 859 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Pste3g03510 859 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Pste3g03510 859 FunFam Lipoxygenase 170 269 - -
Pste3g03510 859 Gene3D - 493 858 - -
Pste3g03510 859 Pfam PLAT/LH2 domain 67 164 IPR001024 GO:0005515
Pste3g03510 859 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Pste3g03510 859 Gene3D - 170 269 - -
Pste3g03510 859 Gene3D - 270 358 IPR027433 -
Pste3g03510 859 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 859 IPR013819 GO:0016702|GO:0046872
Pste3g03510 859 CDD PLAT_LH2 12 166 IPR042057 -
Pste3g03510 859 FunFam Lipoxygenase 494 858 - -
Pste3g03510 859 Gene3D - 359 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03510 Pste-Chr3 27630084 27634021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03510 5 859 Acyl Lipid Metabolism Gene Families AT1G55020 60.208 0.0 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03510 3 27630084 27634021 Pste6g01094 6 4493466 4495820 PCT