Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03466 ATGCCAAATATTTTGCTTAGGATTTTCCTTCTTTACAACCTCGTACAGCCATTCCTGGTGTGTCTGGTCCCCAAGAAGGTGCGTGGCTTCCTCCGCCCTTCGTGGTTGGAAACCATCACCATCAGAGCACCTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTGCTGCAATAACCCTCAAGAGAATCTCAATAAGCATGGATCCACACGAGCTGAAGCGCGTGTTCCAGATGTTCGACCGGAACGGGGACGGGAGAATAACGAAGAAAGAGCTGAACGACTCGTTGGAGAATCTGGGCATTTACATCCCGGACAAGGAACTTAGGCAGATGATCGAGAGAATCGACGTGAACGGAGATGGGTGTGTGGACATTGACGAGTTTGGTGAGTTGTATCAGACCATCATGGACGAGCGTGACGAAGAGGAGGACATGAGGGAGGCTTTCAACGTCTTCGATCAGAACGGTGACGGCTTCATCACCGTCGATGAGTTGAGGACCGTTTTGTCCTCCCTCGGCTTGAAGCAGGGCAGAACGCTCGAAGACTGCAAGAAGATGATCATCAAAGTTGATGTTGATGGAGATGGCATGGTTGATTACAAGGAGTTCAAGCAAATGATGAAAGGAGGTGGCTTCAGTGCTCTCACTTAA 672 0.4881 MPNILLRIFLLYNLVQPFLVCLVPKKVRGFLRPSWLETITIRAPDSSSSSSSSSSSSSSSAAAAITLKRISISMDPHELKRVFQMFDRNGDGRITKKELNDSLENLGIYIPDKELRQMIERIDVNGDGCVDIDEFGELYQTIMDERDEEEDMREAFNVFDQNGDGFITVDELRTVLSSLGLKQGRTLEDCKKMIIKVDVDGDGMVDYKEFKQMMKGGGFSALT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03466 223 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Pste3g03466 223 SMART efh_1 189 217 IPR002048 GO:0005509
Pste3g03466 223 SMART efh_1 114 142 IPR002048 GO:0005509
Pste3g03466 223 SMART efh_1 151 179 IPR002048 GO:0005509
Pste3g03466 223 SMART efh_1 78 106 IPR002048 GO:0005509
Pste3g03466 223 ProSitePatterns EF-hand calcium-binding domain. 198 210 IPR018247 -
Pste3g03466 223 FunFam Calmodulin-like protein 5 47 147 - -
Pste3g03466 223 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Pste3g03466 223 SUPERFAMILY EF-hand 78 217 IPR011992 -
Pste3g03466 223 Pfam EF-hand domain pair 149 215 IPR002048 GO:0005509
Pste3g03466 223 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Pste3g03466 223 Gene3D - 33 149 - -
Pste3g03466 223 CDD EFh 155 215 IPR002048 GO:0005509
Pste3g03466 223 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Pste3g03466 223 CDD EFh 78 135 IPR002048 GO:0005509
Pste3g03466 223 Gene3D - 150 216 - -
Pste3g03466 223 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 149 215 - -
Pste3g03466 223 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Pste3g03466 223 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Pste3g03466 223 FunFam calmodulin-like protein 3 148 218 - -
Pste3g03466 223 ProSiteProfiles EF-hand calcium-binding domain profile. 185 220 IPR002048 GO:0005509
Pste3g03466 223 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03466 Pste-Chr3 27253589 27254260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03466 5 221 EF-hand Containing Proteins AT2G43290 62.162 1.09e-91 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03466 3 27253589 27254260 Pste3g03466 3 27253589 27254260 ECH
Pste3g03466 3 27253589 27254260 Pste1g02113 1 6653695 6654307 PCT