Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03139 CCAACTACCCCTTTGATCTTTTGTCCCCCACTCTGCTCACTAAAATGCCAATGTTAACTTCCTCTTCTTTCTTCCACACGGCTCCTCTCTTCTCTCTTCTTTTATTCTCACTCATGATTCGTTATTGTACTTCCCAAGATCCACCTTCAACTGGCTACTATCCTAGTTCCAAAATTAGCCCAGTTAGCTTTGATGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAATCTAGACCAAGACTCATTAACAATCTGGCTCGACTCTTACTCAGGGAGTGGATTCAGGTCACTCCACTCTTATCAATCTGGATACTTTGGTGCTGCCGTTAAGCTTCAACCCGGTTATACTGCAGGAGTCATAACATCTTTCTACCTTTCAAACAACCAGGACTACCCAGGAAACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCAGATAAGCAATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGAAATATTATCGGGAGAGAAATGAGATTTCACCTTTGGTTCGACCCAACTGAAGATTTTCACAACTATGCTATTCTGTGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTACCAATAAGGAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCACAAGACAAATGTACGTGTACGGATCAATATGGGATGCATCTTCGTGGGCAACGGAGGGAGGAAAATACAAAGCTGATTATAAATTCCAACCCTTCATTGGTAGATACAAAAACTTCAGAATACAAGGTTGTACCACTGAAGCCTCCACCTCATGTCAGCCACCATCTCCCTCTCCATCAGGCTATGGCAGCCTGAGCCCTCAGCAACTTGCTGCAATGCAATGGGTCCAAAACAACTACTTGGTCTATTACTATTGCCACGACCCTAGGAGAGACCACACGCTTACTCCAGAATGCTAAGGTTTAAGCTATACTTGGATTGAAGTTGGGAAGATACTTTTAAGAATTCTAATGCACATAACCAAATTCTAATATACAAAATGAGAAAGGAATAATTTATTGATTTGAAAATAAAATTACGTTTGAACTCTCCAAGTTGAAATCCATACATGCACTAAACTTGGGTTCAACTTGGTACTTTCAAAGTTACTTTTTACTTTTCACATGTTACAGCAAAACAATTTATTCAAGGGGTGGATTCTGTGATGGTCCCACTTGCCAACGCTGAGTGCAATGCAACAATAGTGAGCGTCCAAGCCCCCCCAAAAAAGATTGGGATGTTTTCGTTGTTTATGTAATTTTGTTGCTTGTTGGTACCCTACAACAGATTGGGATGTTTTTGTTGTTTGTGTAATTGGGGTGTACTGTTACTTAAGTCCTTTTCCTGTTGAAATAAATCTATTTGGATACTTTCCTTATTCGTATTCAATCTGTGACTCCATAAATATAATAACTAATGTTCC 1459 0.4058 MPMLTSSSFFHTAPLFSLLLFSLMIRYCTSQDPPSTGYYPSSKISPVSFDEGFRNLWGPQHQNLDQDSLTIWLDSYSGSGFRSLHSYQSGYFGAAVKLQPGYTAGVITSFYLSNNQDYPGNHDEIDIEFLGTTPDKQYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTEDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPTRQMYVYGSIWDASSWATEGGKYKADYKFQPFIGRYKNFRIQGCTTEASTSCQPPSPSPSGYGSLSPQQLAAMQWVQNNYLVYYYCHDPRRDHTLTPEC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03139 303 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 40 240 IPR000757 GO:0004553|GO:0005975
Pste3g03139 303 PIRSF EndGlu_transf 12 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pste3g03139 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 48 303 IPR044791 GO:0004553
Pste3g03139 303 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 303 IPR013320 -
Pste3g03139 303 Pfam Glycosyl hydrolases family 16 51 232 IPR000757 GO:0004553|GO:0005975
Pste3g03139 303 Gene3D - 29 303 - -
Pste3g03139 303 FunFam Xyloglucan endotransglucosylase/hydrolase 36 303 - -
Pste3g03139 303 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 268 303 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03139 Pste-Chr3 24181116 24183258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03139 16 303 Glycoside Hydrolase AT3G44990 64.041 4.17e-137 388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03139 3 24181116 24183258 Pste3g03139 3 24181116 24183258 ECH
Pste3g03139 3 24181116 24183258 Pste1g02716 1 10990899 10992695 PCT