Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01407 ATGGCTGAGGAGGCTCCAAACCAAACAACCACTGCTTCGCAGGAGTCACTGGATGATGTGGTGGTAACCCATGTTCCACACCCTGAACAAAAAACCACTGTTCAGGTTCAAAGAGATTCACAACCTCAACCTGAACCTGAACCTGAACCTGAACCTGAACCTGAACCTGAGGAGCCTGAGAAGAAGCCCGTTCAGGAAACCGTTACTCTCTCGAGTCACCTTTCGAAACCCAATAATGGTGAGGAGAAAATCCCTGAATTCAAGGAAGAAAGCACTAAACTATCTGAGCTCCCACAAAACCAAAACAAGGCACTCGAAGAGCTGAAGAAGCTCGTCCAAGAAGCTCTCAACAACCATCTCTTTTTTCCCATTGACCAAAAGAAGCCACCGGCAACCTCTCCAACTTCTGAGAAGGGAGAACAACAGGAAGACGTAGTAACTGAAACTAAAACTGAAGAGGAGCAACTTGAAACAAAAAAAGAGGAAGAAGCTGCTCTGGATGACGATGGAGCCAAAACTGTGGAGGCCATTGAAGAGACCGTCGTCGCTGTCTCTTCCTCGGCTCAGCCTCAAGCTGAAGAGAAATCTTCTGAAACAGAAGCCAAAGATGAAGCTTCAGCACCACTTCCACCTGAAGAGATTTCCATTTGGGGGATACCACTGCTTGCAGATGAGAGGAGTCATGTCATTCTGCTCAAGTTTCTGCGTGCCAGAGAGTTCAAGGTCAAGGAGGCATTCACCATGCTGAAGAACACTATCCGGTGGAGGAAGGAGTTTGGGATGGAGGACTTGATGGAGGAGAAGTTGGGGGATGATTTGGAGAAGGTTGTCTTCATGCATGGCTTTGACAAGGAGGATCACCCTGTGTGTTTCAACATATATGGGGAGTTCCAGAACAAGGACTTGTACAAGAAGACCTTTTCTGATGAAGAGAAGAGGGACAAGTTCCTCAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATAAGGAAGTTGGATTTCTACCCTGGTGGCATATGCACCATTGTTCAGGTCAATGACCTCAAGAACTCTCCTGGACCTGCCAAGTGGGAACTTCGACAAGCCACCAAGAATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTTGCCAAACAGGTGTTCATTAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCAGAGAACTAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAAACAACGGAAACCCTTTTGAGATACATAGCTCCAGAGCAGCTTCCCGTGAAGTATGGTGGCTTAAGCAAAGACGGAGAGTTCGGAAATACCGATGCTGTTACCGAAATCACAGTGAGGCCGGCAGCAAAACATACTGTGGAATTTACAGTCACTGAGGACTGCTTACTCTCTTGGGAGCTGAGAGTAATAGGGTGGGAAGTAAGCTATGGGGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATTGTCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAAGTTGGTGAACCTGGGAAAGTTGTTCTCACTATTGACAACACAAGTTCTAAGAAGAAGAAGCTGTTGTACCGCTTGAAGACCAAGCCTTCCCCCACTGATTGAAGTTGTTCTCACTATGTGCAAGTGGCTGCTTACATTCCTGCATCAACTTTTACCAAGACCCCAGAGCTTCAAAGATTAACATTCCTGCTGTTCATATATGAATATAAAGTTTTTGTTTTAATGATTGTTATGTGTTCAACCATATTATATAATTATATATACCTCTTTCCCTGTTTTTCTTGCTATGATTATTTATTGTTGTTGTTATCACTGAAGATAAATATCAAGGTCCTTTTTTCAAATTGGGGTAATCTTTTGAGTTGTTCTTATTCATTTTAGGGAGGATTGGTTGCTCTATTTGTATGTTATAAATATCATGTAAATTTTGGTGGGACCTTTCTCTATCTCTGTCGCCCTGTCTGTACCTAAGCATGAAGTGTGTTTGAGAGCTGTCATGATCCGTGTTCCC 2068 0.4415 MAEEAPNQTTTASQESLDDVVVTHVPHPEQKTTVQVQRDSQPQPEPEPEPEPEPEPEEPEKKPVQETVTLSSHLSKPNNGEEKIPEFKEESTKLSELPQNQNKALEELKKLVQEALNNHLFFPIDQKKPPATSPTSEKGEQQEDVVTETKTEEEQLETKKEEEAALDDDGAKTVEAIEETVVAVSSSAQPQAEEKSSETEAKDEASAPLPPEEISIWGIPLLADERSHVILLKFLRAREFKVKEAFTMLKNTIRWRKEFGMEDLMEEKLGDDLEKVVFMHGFDKEDHPVCFNIYGEFQNKDLYKKTFSDEEKRDKFLRWRIQFLEKSIRKLDFYPGGICTIVQVNDLKNSPGPAKWELRQATKNALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKTTETLLRYIAPEQLPVKYGGLSKDGEFGNTDAVTEITVRPAAKHTVEFTVTEDCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPTD 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01407 552 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 266 441 IPR001251 -
Pste3g01407 552 SMART CRAL_TRIO_N_2 227 252 IPR011074 -
Pste3g01407 552 MobiDBLite consensus disorder prediction 1 101 - -
Pste3g01407 552 MobiDBLite consensus disorder prediction 141 169 - -
Pste3g01407 552 Pfam CRAL/TRIO domain 276 435 IPR001251 -
Pste3g01407 552 SUPERFAMILY CRAL/TRIO domain 276 438 IPR036865 -
Pste3g01407 552 MobiDBLite consensus disorder prediction 182 209 - -
Pste3g01407 552 Gene3D - 272 448 IPR036865 -
Pste3g01407 552 Gene3D GOLD domain 449 546 - -
Pste3g01407 552 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 447 546 IPR036598 -
Pste3g01407 552 PANTHER PATELLIN-1 52 549 IPR044834 GO:0008289
Pste3g01407 552 Gene3D - 189 258 - -
Pste3g01407 552 MobiDBLite consensus disorder prediction 122 169 - -
Pste3g01407 552 SUPERFAMILY CRAL/TRIO N-terminal domain 93 267 IPR036273 -
Pste3g01407 552 PRINTS Cellular retinaldehyde-binding protein signature 230 252 - -
Pste3g01407 552 PRINTS Cellular retinaldehyde-binding protein signature 393 412 - -
Pste3g01407 552 ProSiteProfiles GOLD domain profile. 445 546 IPR009038 -
Pste3g01407 552 MobiDBLite consensus disorder prediction 79 93 - -
Pste3g01407 552 Pfam CRAL/TRIO, N-terminal domain 212 251 IPR011074 -
Pste3g01407 552 MobiDBLite consensus disorder prediction 1 18 - -
Pste3g01407 552 CDD SEC14 272 436 IPR001251 -
Pste3g01407 552 SMART sec14_4 271 438 IPR001251 -
Pste3g01407 552 MobiDBLite consensus disorder prediction 28 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01407 Pste-Chr3 8724669 8728008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01407 231 430 Acyl Lipid Metabolism Gene Families AT1G55840 26.636 7.91e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01407 3 8724669 8728008 Pste3g01407 3 8724669 8728008 ECH
Pste3g01407 3 8724669 8728008 Pste2g00365 2 3026083 3027959 PCT