Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00365 GAGAACTGCAAGAAATTGTGAGTTAGAAACAACAAGATAGAAAATATGAACCTCGCTAGAATCACCATATTTGTATCGTTACTTCTGGTTGAATTTTGTTTTGCTAACAATGGAAATCTTGACATATCAGCATTTGGGGGAAAACCAAATTCAGATATAGCAAAGGCTTTGTCAAGTGCTTGGACTCAAGCATGCGCATCAACAACTCCGGTCAAAATTGTGATTCCAGGTAGTACATATCAAATGAGTGTGTTAGAATTGAAAGGTCCTTGCAAGGCTCCTATTGAAATTCAAATTGATGGCACAATTAAAGCACCTGCAGACCCGAATACCATGAAGGGTGCTTATCATTGGCTGACGATTGGAAGGGTTGACTCTATAACCCTATCAGGTAAAGGTGTTTTCGATGGTCAAGGTGCAAATGCTTGGAAAAGAAATGATTGTCATAAAAAACTACAAAATTTGGGTTTTAATTTCGTCAATAATTCAATTGTTCGTGGCCTTACATCCAAGGATAGCAAAACTTTTCATGTCAATGTTATAAGTTGCAACAATTTCACTTTTGATGGGTTTAAAGTTTCTGCCCCAAACAATAGCCCCAACACTGATGGGATCCATATTGGAAGATCCACGAATGTAAATGTTATTAATACAGATATTGCTACTGGAGATGACTGTATCTCAATAGGTGATGGTAACAAAAAATTAACTATACAAAATGTTGTTTGTGGACCTGGTCATGGCATTAGTGTTGGAAGCCTTGGGAGGTACGAAATTGAAGAGTCTGTGGAAGGTCTTTTAGTTAAGAATTGCACTTTCAAGGGAACTGACAATGGTGTTAGGATTAAGACTTGGCCTAATAGCCCAGTAAAAATTACAGTTTCTGATATGCATTTTGAAGATATTATCATGACTAATGTTAGGAACCCTATCATCATAGACCAAGAGTATTGTCCATGGAATCAGTGTAAGAAACAGAATCCATCAAAAATCAAGATAAGCAACATTTCATTCAAGAACATTAAGGGCACTTCAAGTGCTCTAGAAGGAGTTGTTCTTTCTTGTAGTAGTGGTGTACCATGTCAAGATATAGAGATGGCTAATGTTGATCTCACATTCAATGGAGCTGCGGCAAAAGCTAAATGTTCTAATGTCAAGCCCAAAATAATAGGAAAAGCTCCTGCTTGTGGTGATGGTGTTAGTGCTGGTGGCAGCTGAAGTGGTAGTGGTAGTGGTGCTCCTAGTGGTGGTGCTAGTAATGCTCCTGGTGGTGGTGGTCGTGGTGATGATGATTAGAATGAGCATATACAAGAATGCTCATTTTTTTCTTTTAAGAGTATGTAACATCCCTATTAATTGAGGAGATGACTAGTTATTATAGTTACTTTTTTAATAAATACTTTAACAAGGTTATGGTAGAACAACCATCACTGATGTAGAACTTTATGTAAGTTTGCAATAACCACATGAA 1471 0.3732 MNLARITIFVSLLLVEFCFANNGNLDISAFGGKPNSDIAKALSSAWTQACASTTPVKIVIPGSTYQMSVLELKGPCKAPIEIQIDGTIKAPADPNTMKGAYHWLTIGRVDSITLSGKGVFDGQGANAWKRNDCHKKLQNLGFNFVNNSIVRGLTSKDSKTFHVNVISCNNFTFDGFKVSAPNNSPNTDGIHIGRSTNVNVINTDIATGDDCISIGDGNKKLTIQNVVCGPGHGISVGSLGRYEIEESVEGLLVKNCTFKGTDNGVRIKTWPNSPVKITVSDMHFEDIIMTNVRNPIIIDQEYCPWNQCKKQNPSKIKISNISFKNIKGTSSALEGVVLSCSSGVPCQDIEMANVDLTFNGAAAKAKCSNVKPKIIGKAPACGDGVSAGGS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00365 390 SUPERFAMILY Pectin lyase-like 10 379 IPR011050 -
Pste2g00365 390 Pfam Glycosyl hydrolases family 28 50 372 IPR000743 GO:0004650|GO:0005975
Pste2g00365 390 FunFam Pectin lyase-like superfamily protein 15 381 - -
Pste2g00365 390 ProSitePatterns Polygalacturonase active site. 225 238 IPR000743 GO:0004650|GO:0005975
Pste2g00365 390 Gene3D - 20 380 IPR012334 -
Pste2g00365 390 SMART pbh1 313 340 IPR006626 -
Pste2g00365 390 SMART pbh1 248 269 IPR006626 -
Pste2g00365 390 SMART pbh1 346 389 IPR006626 -
Pste2g00365 390 SMART pbh1 279 300 IPR006626 -
Pste2g00365 390 SMART pbh1 195 216 IPR006626 -
Pste2g00365 390 SMART pbh1 218 238 IPR006626 -
Pste2g00365 390 SMART pbh1 168 194 IPR006626 -
Pste2g00365 390 PANTHER - 26 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00365 Pste-Chr2 3026083 3027959 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00365 7 376 Glycoside Hydrolase AT3G07820 50.529 5.21e-138 397
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00365 2 3026083 3027959 Pste2g00365 2 3026083 3027959 ECH
Pste3g01407 3 8724669 8728008 Pste2g00365 2 3026083 3027959 PCT