LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g02972	GCAAGTGCACAACCATATTTTGGCACTTGAACCTTCTGCCAACATACTTCACCCAGGAAGATTCCCGTTTTCTTCCTTTTTCTTATTTTTCTTTCGGTTCATTTTCTGCCTATAAATACAGAATTATTATTCACATTATATGCGTTTTTCTATAATCGAAATCTACTCTGCAATTCACAATTCTCTTTCTGCCTACTACCTCGTTGTGGTCTTGATTTCTAGGGCTACTTTCTCGTTAAGACCCCTCTCATTGTGCTTCGCTTGCGGCGATTACTCTCTTTGTTGGTTTTCTCTATTGCTTATGAAAGTTAGGGCGTGAATTGAATGAACAATCAATCATGTTCTTCAGCGGCGATTCCTCTACTCGTAAGCGTGTTGATTTAGGTGGTCGCAGCTCGAAGGAAAGGGACAGAAAAAATCTTCTGGAACAGACGCGATTGGAGCGGAACCGGCGTTTGTGGTTGCGCCAGCAGAACTCTGCTGCTCTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAGTCTAAACTACGAGAGAAATTCTTTAGTATCTATGGGAACTGCCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGACGATTTTTTAATTCTTGTGCAAATTTGCCGATGGCTTCAACAGTTTATTCAAGAGAGTGGGGATGTTGAGAAACTTTTTGCTGGTGTGGATTACTCATCCATGTGTGCTTTGGTGAACTATCGAGTGAAGGAATTTGTATATACTTGTATTCGTGCTGTACATCAGAATAGGAATAAGTTGAAGGATCCGCTCTTATTGACTCCAAAGGAATTTAATGCATCATTTATTCCTTTATTTGAAGTCACAGTATTGTTGATAGATCCCAAACTACCATGGAGCTGTAAGATAGGAGGATATCTGTCCCAGAACAATGCATTTGGCCTATTTAGAGAGATTATTCTTGCAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAGAAAGGATCATCACTGGAGCAAGTGCTTACCATTGTAATATGTCACATTGGTCATAAGCCGTGTATCTGTTTAGATACTGATCCTGTATACAGCTTCTCATCACAGATTCTTACAATTCCTTTCTTGTGGCAAGTTTTCCCAAACTTAAAACAGGTATTTGCAAAACAGGGCCTGAGTCAACATTACATTCATCGGATGGCAACATGGGTGCCAAATCTGATTAATTATCTTCCTAAGAATATATCGGATGAATTTCCTACTTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAATCACTTTGACTCGACCTGACTGTTCCTTTGATATGGCCGTAGACCTTGCTGCTGTTATTACATTTTTGCTGGAATCACACCCATCTCTAACCAGATCCGAAGATATAGAGAATTCTGCTATTACTGAGGATGAAATGACTGGCAAAGATGAAGTCATGGAAGTGGCTTTGAATAGGAAGTTGAATCAACAGATTTGTAATGCCATAGATACTCGATTCCTTTTGCAACTGATACATACATCATTTAGAGATTTTTCACCTGCCAATGGTTTAGAACATGAGTCAGATGACAGGGAGGTCACAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTTAACACATTGCCCCTCGAAAGGATTATGACTGTGCTTGCCTACAGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAATAAAAAATGGTCATCCTTGTCTGAACGGTTATCATACCTCTCTGGTGATGTGCCTGGTTGGTTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAAGAGAAACCTCTATCACTGAAGGATATTAGAAGCCTTATTATTCTGTTAAGGCAGGCTCTGTGGCAGCTCTTGTGGGTGAATCATACCACATCTTCTAATTCAGTTAAATCTGTTCCAGTTAGCACATCTATTAAAAAGCAGTCTGAAGCAATTCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTTTTGTCCCAGCTGCAAGATTGGAACAACCGGAGACAGTTTACGTCACCCAGTGACTTCCATGCTGATGGGGTGAATGACTTCTTTATCTCTCAGGCTGTCATAGAAAATACACGTGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATTTTCACTTCTCAACTAGCTGCTGCAAGGCAAAGACATGGATCTCAGGCTGTTTTTAGTAGAAACAGGTTCAGAATACGGCGGAATCATATTCTGGAAGATGCCTATGATCAAATGAGTCAGCTGTCAGAAGATGACCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGCATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACGCGAGCTGCCTTTGATGTTCAGTATGGATTATTTAAGGAAACTGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACATCATCTCCAATTTTTCCACTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTTGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTTATCTTTCTAAAGCATTACGAGGGAGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAATAATCTTCGTGTCTCTAATGAGAATATACGTCAGCAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGACTGGATTGACATGTTTAATGAGCATGAACTTCAGGTTTTCCCTATCTTGACCCAC	3020	0.397	MFFSGDSSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFFSIYGNCQNLDRNAFGPDSDFLRQFLYFFNAENIDDFLILVQICRWLQQFIQESGDVEKLFAGVDYSSMCALVNYRVKEFVYTCIRAVHQNRNKLKDPLLLTPKEFNASFIPLFEVTVLLIDPKLPWSCKIGGYLSQNNAFGLFREIILAGKDNAENCIYSEKGSSLEQVLTIVICHIGHKPCICLDTDPVYSFSSQILTIPFLWQVFPNLKQVFAKQGLSQHYIHRMATWVPNLINYLPKNISDEFPTYACLLGNILETGGITLTRPDCSFDMAVDLAAVITFLLESHPSLTRSEDIENSAITEDEMTGKDEVMEVALNRKLNQQICNAIDTRFLLQLIHTSFRDFSPANGLEHESDDREVTAVGAVCGFLYVIFNTLPLERIMTVLAYRTELVPILWNFMKRCHENKKWSSLSERLSYLSGDVPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLLWVNHTTSSNSVKSVPVSTSIKKQSEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVIENTRANEILKQAAFLIPFTSRVKIFTSQLAAARQRHGSQAVFSRNRFRIRRNHILEDAYDQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEHHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGDISELELYFVIVNNEYGEQTEEELLPGGNNLRVSNENIRQQSSHFLRGFQQLIQKDWIDMFNEHELQVFPILTH	894

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g02972	894	ProSiteProfiles	IQ motif profile.	45	72	IPR000048	GO:0005515
	Pste2g02972	894	ProSiteProfiles	HECT domain profile.	689	860	IPR000569	GO:0004842
	Pste2g02972	894	FunFam	Putative Ubiquitin-protein ligase E3C	794	865	-	-
	Pste2g02972	894	Gene3D	Hect, E3 ligase catalytic domain	794	857	-	-
	Pste2g02972	894	Gene3D	Hect, E3 ligase catalytic domains	670	888	-	-
	Pste2g02972	894	MobiDBLite	consensus disorder prediction	11	28	-	-
	Pste2g02972	894	MobiDBLite	consensus disorder prediction	1	28	-	-
	Pste2g02972	894	SMART	hect_3	687	894	IPR000569	GO:0004842
	Pste2g02972	894	PANTHER	UBIQUITIN-PROTEIN LIGASE E3C	9	888	IPR044611	GO:0000209\|GO:0061630
	Pste2g02972	894	Pfam	HECT-domain (ubiquitin-transferase)	725	887	IPR000569	GO:0004842
	Pste2g02972	894	SUPERFAMILY	Hect, E3 ligase catalytic domain	659	888	IPR035983	GO:0004842

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g02972	Pste-Chr2	29651395	29688797	Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g02972	2	29651395	29688797	Pste2g02972	2	29651395	29688797	ECH
	Pste6g03941	6	28604859	28612059	Pste2g02972	2	29651395	29688797	PCT