LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g01438	TTTGTCACAAAGGGGGTGGTGTGGGGGGTGGGGTTTTATCCAAGTGATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCGGAGGCTGCTTCAGTGTTGAAGCACTCTCTTGGGTTGGCACGCAGAAGGGGCCATGCACAGGTCACCCCTCTGCATGTGGCTGCAACTTTACTGAGCCTAAGAGCCAGTTCTCTAAGAAGGGCTTGTCTCAAGTCTCAGCCACACCAAACTTCACACCCTCTTCAGTGCAGAGCCCTTGAGCTTTGCTTCAATGTGGCCCTCAACAGGCTTCCAACTACACCTGGTCCCTTGCTCCACACACAGCCTTCTCTCTCCAATGCTCTCATTGCTGCACTCAAGAGAGCTCAGGCTCACCAGAGAAGAGGCTGCATTGAGCAGCAGCAACAGCAACCACTTCTCACCATCAAGGTGGAGCTTGAACAGCTCATTATATCTATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCTAGCACTGCTGTTAAAAGCAACATAGAGGACACTTCTTCAGCACCTTCTGTGTTTCAGTGTTACAACAGTTCTGGTGGTGTTTTCTCTTCTCCTTGCTCACCTTCTCCCAGTGAGAACAACATTGCCACTGCCTTCAGGCAGAACCATTTCCTCGCTTCTTACACTTCTTCTGAGTTTAGTACTCCACTTCTGTTCTCTCCTCAGAAGAAGGCCTCAGTGTTTCCCATCACTGACTCACCTCCACCCTCTTCCAAGGAGGACATCAAGGTGGTTCTTGATGTCCTCTTGAGGAAGAAGAAGAGGAACACTGTGATAGTTGGTGACTCAGTGGCACTCACTGAAGGCCTTGTGGGGGAGCTAATGGGGATGTTGGAGAGAGGAGAGGTGCCTGATGAGTTGAAGTCAACACATTTCATCAAGTTTCAGCTTGCACCAGTTTCTTTGAGGTTCATGAAAAGGGATGAAGTGGAGATGAGTCTCTCAGCACTGAAAAGGAAGATGGATTCTGTTGCTTCAGGAGGAGGAGCTATTTTCTATATTGGAGACCTGAAATGGACAGTGGAAACAACAACTTCAAGCGAAAAAGAGGAAGGTGATGTTTGTGGTTATAACCCAGTTGAACATCTAGTTTCTGAAATAGGTAAGTTATTTTGTGACTCCAACACTAAGGTGTGGCTTGTGGCCACAGCAAGTTATCAAACATACATGAGGTGCCAAATGAGGCAACCCCCTCTTGAGACTCAGTGGGCTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTCCATGCTTCCAGTACGTACGGTCTCTGGACTATGCCTGAAGCCACTGTCAAAAGCATGGTTGGTTGTGTACACGATTCAAAGGTGACAATCTCCCAAAACCCATCTCATATGCTGGAAACAAAACTCTTCAGTAGCAACAAGGAGGAGCAGGATAAACTCAACTGTTGTGAAGAATGTGCATCCAATTATGAAAAAGAAGCTCAATTGTTCAAACCGGGCCAGAAGAAACTGCTACCTTCCTGGCTTCAGTCTCATACTACCGAAGCCCATCAAAAGGATGAATTAAGCCAGTTGAAAAGGAAATGGAACAGACTATGCCACTGTCTGCACCAGAGCAAGCAGCCTCAGAACCATTGGAGCAACAACACTTTACATGGGAATCACAGTTCAAATGGAAAGATCTACCCTTACAATTCATCATACCCCTGGTGGCCAAACCAAGGCAGTGTTTTCACAGATTCAAGCTCCATATCTTTTGCTGATTCAGCTGTCAAACCAGCATATAGCTCCAGCATTGTCCCTCGGTTCAGGCGCCAGCAATCATGCACCATTGAATTCAATTTCAGTGATGTGACTCAGAAAAAACCATCCACAGCCACAGCCTTGGATTCTCTCAAGGGCATGGAAGGTAATAACGAAGTAAAGATTACTCTTGCTCTTGGAAATTCAACATTCGGTGGTTCGGGGCAAACGGTGGAAAATATAACTACTGATAGAACACTGCGACAAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATATGAGACAGTTGATACCATAGCTGAGGCCTTGGTTGATTGCAAATCTGCAAAGCAAAGTGCTACTACTTGGTTGTTATTGCAAGGAACTGACTCTATTGGGAAAACAAGGTTGGCACGTGCCATTGCTGAATCAATGTTTGGCTCTGTTGATGTGCTCCTTCACTTGGACATGCTGAAAAATAACATGGAGAATTCAGCAACCCCTTTTGCTGAAATGGTGGTTGGAGCATTGAAAAGCCATGAAAAGCTTGTGATTCTTATAGAAAGTTTGGATTTTGCTGATGCTCAATTCAGGAAGTTCCTTGTAGATGGGTTTGAAACTGCAAAGTTTGGAAATTTAAGTATGACTGAGGAGAGTTCAGGCCAAGCAATATTCATATTGACCAATGGGGACACAAGGAGCAATGAAGATCAGAACAACATGGACTCAGTGATGAAGTTGGTGTTGCAGATAAGTGAAGCAAAGCCTACTTGGGGGTCTTCATCACCTTGTTTGGGTCAGAAGAGAAGGGCTGAAGTAATGGATTTGTTTTCCAAGGTTAAGAATCCAAGGGTTGAGGAGAAGGAGGGTAGGAAAGTGTTTTCAAGGCATTCAAGCTTCAACAATCTTGATCTGAACATGAAAGCTGATGAAGAAGAGGATGATGGGGAAGAGAAAACAGGTGGAAGTAGTCCAATTTCAAGTGATTTGACCAGGGAAACTGTGGCAGATCCATTGAGCTGGAATGGGGCACTTGACTCAATTGAGAACAGGTTTCAGTTGAATGAAAGTCCAGAGAGGGAAAAGGAAATGGGAGAGATGTTTCTATCAAAGATCAAAGAGTCTTTTGAGGAGGTTTATGGGAAACAAGGTGTGGTGAATTTTACTGTAGAGAAGAGGGTGATAGAGGAAATTGGTGTGGGGTGTGGTAATTTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAACTTTGGTGGGAAGGAGGGGGGTATAGGTTTTACACTTTGTTGGGGTGGTAAAGGAGATAGGAAATCGGATAGTGGATTCATGGGTTCATGTTTGCCCAAGAATGTCCAAGTTAACTACTTCATGGATTGACTGACTTTGGATAGTGGGGGGGTTTCTTGTAAAATGGTCCACAAGTTGTAAAATGCAAGTCATAGCCTTTGTGTAACTGCT	3271	0.4503	MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKSNIEDTSSAPSVFQCYNSSGGVFSSPCSPSPSENNIATAFRQNHFLASYTSSEFSTPLLFSPQKKASVFPITDSPPPSSKEDIKVVLDVLLRKKKRNTVIVGDSVALTEGLVGELMGMLERGEVPDELKSTHFIKFQLAPVSLRFMKRDEVEMSLSALKRKMDSVASGGGAIFYIGDLKWTVETTTSSEKEEGDVCGYNPVEHLVSEIGKLFCDSNTKVWLVATASYQTYMRCQMRQPPLETQWALQAVPVPSGGLGLSLHASSTYGLWTMPEATVKSMVGCVHDSKVTISQNPSHMLETKLFSSNKEEQDKLNCCEECASNYEKEAQLFKPGQKKLLPSWLQSHTTEAHQKDELSQLKRKWNRLCHCLHQSKQPQNHWSNNTLHGNHSSNGKIYPYNSSYPWWPNQGSVFTDSSSISFADSAVKPAYSSSIVPRFRRQQSCTIEFNFSDVTQKKPSTATALDSLKGMEGNNEVKITLALGNSTFGGSGQTVENITTDRTLRQAHICKLLQENVPWQYETVDTIAEALVDCKSAKQSATTWLLLQGTDSIGKTRLARAIAESMFGSVDVLLHLDMLKNNMENSATPFAEMVVGALKSHEKLVILIESLDFADAQFRKFLVDGFETAKFGNLSMTEESSGQAIFILTNGDTRSNEDQNNMDSVMKLVLQISEAKPTWGSSSPCLGQKRRAEVMDLFSKVKNPRVEEKEGRKVFSRHSSFNNLDLNMKADEEEDDGEEKTGGSSPISSDLTRETVADPLSWNGALDSIENRFQLNESPEREKEMGEMFLSKIKESFEEVYGKQGVVNFTVEKRVIEEIGVGCGNFTNSMFEKWLKDIFQSSLQTVNFGGKEGGIGFTLCWGGKGDRKSDSGFMGSCLPKNVQVNYFMD	1047

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g01438	1047	SUPERFAMILY	Double Clp-N motif	12	165	IPR036628	-
	Pste2g01438	1047	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	670	807	IPR027417	-
	Pste2g01438	1047	Coils	Coil	467	487	-	-
	Pste2g01438	1047	FunFam	protein SUPPRESSOR OF MAX2 1	9	170	-	-
	Pste2g01438	1047	PANTHER	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	1	1010	-	-
	Pste2g01438	1047	Pfam	Clp amino terminal domain, pathogenicity island component	26	46	IPR004176	-
	Pste2g01438	1047	Pfam	Clp amino terminal domain, pathogenicity island component	131	166	IPR004176	-
	Pste2g01438	1047	Gene3D	-	647	862	IPR027417	-
	Pste2g01438	1047	Gene3D	-	9	169	IPR036628	-
	Pste2g01438	1047	MobiDBLite	consensus disorder prediction	883	912	-	-
	Pste2g01438	1047	Gene3D	-	235	414	IPR027417	-
	Pste2g01438	1047	ProSiteProfiles	Clp repeat (R) domain profile.	8	170	IPR004176	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g01438	Pste-Chr2	15650749	15655025	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g01438	2	15650749	15655025	Pste2g01438	2	15650749	15655025	ECH
	Pste6g03771	6	26812970	26817337	Pste2g01438	2	15650749	15655025	PCT