Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03288 TGACTACATATAACTGGTAAGCACTAAGACAGAGTAGTTGATGAAAGAAAGAAAAAATGAAGTTAGAGAGTATGTATGGGTATAGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGTTTATGTCCTGGTGGTAGTGTCATCAGAGTTCCCTAGTGCTGCTGGAGACGATGTTGGGAGCGTGATCAGTGGTGCTCTATTTGACCAAATGCTGAAACACCGAGACGATCCAGCTTGTGAGAGGCAAGGGTTTTACAACTACAACGCTTTCGTGACCGCAGCTAGATCCTTTGGTGCATTTGGCACCACAGGTGATCTTAACACTCGTAAGAGGGAGGTTGCTGCTTTCCTAGCCCAATCCTCTCACGAGACCACAGGAGGTAATACCCCTTATGGACCCTATGTTTGGGGCTATTGCTTTATCACCGAAAGAGATAAATCCAAGACTTATTGCGATGGCAAAGGACCGTGTGCCCCAGGCAAATCCTATTATGGCCGAGGACCCCTTCAGTTGACTCACAACTACAACTACAATGCAGCTGGACAATTCTTAAAATTGGACTTGATAAACAATCCGGACTTGGTAGCCCAAGACCCAGTGGTAGCATTCAAGGCAGCTCTATGGTATTGGATGACACCACAATTTAATAAGCCTTCATGCCACGATGTCATCACCAACAAGTGGACCCCATCTTCTACTGACGTGGCAGCTAATAGAGTTCCAGGTTATGGTGTCATCACCAACATCATCAATGGTGGGATCGAATGTGGGAAGGGTCCTAATGCAAGCTCGGATGATAGAATTGGATTTTATAAAAAGTATTGTGACATTTTCGGCCTCCCTTATGGTGCAAATTTAGATTGTAGCAACCAAAGGTCCTTTGCTTCATAAGTTCCCTTGCTTACAAGTGCCAAAGTTAAACAAGTAATAAATAAGAGTTTTGGCCCTTAAGTAGTTTTAAATAATTTTGCCTATGTAAGCTCCTATTTACGAGTTTACCAATAAAATTGCTCCAGTTTTCGTTCAA 1023 0.433 MKLESMYGYRLGLGLGLGLVYVLVVVSSEFPSAAGDDVGSVISGALFDQMLKHRDDPACERQGFYNYNAFVTAARSFGAFGTTGDLNTRKREVAAFLAQSSHETTGGNTPYGPYVWGYCFITERDKSKTYCDGKGPCAPGKSYYGRGPLQLTHNYNYNAAGQFLKLDLINNPDLVAQDPVVAFKAALWYWMTPQFNKPSCHDVITNKWTPSSTDVAANRVPGYGVITNIINGGIECGKGPNASSDDRIGFYKKYCDIFGLPYGANLDCSNQRSFAS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03288 276 FunFam Endochitinase (Chitinase) 122 177 - -
Pste1g03288 276 Pfam Chitinase class I 41 268 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pste1g03288 276 Gene3D Endochitinase, domain 2 122 177 - -
Pste1g03288 276 PANTHER CHITINASE-RELATED 34 272 - -
Pste1g03288 276 CDD chitinase_GH19 42 268 - -
Pste1g03288 276 SUPERFAMILY Lysozyme-like 37 274 IPR023346 -
Pste1g03288 276 PIRSF Endochitinase 16 275 IPR016283 GO:0004568|GO:0005975
Pste1g03288 276 Gene3D - 46 274 - -
Pste1g03288 276 ProSitePatterns Chitinases family 19 signature 2. 181 191 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03288 Pste-Chr1 15042991 15045169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03288 37 276 Glycoside Hydrolase AT3G12500 61.475 1.01e-108 316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03288 1 15042991 15045169 Pste7g01865 7 17118816 17120204 PCT