Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01824 ATGTCGGTTGCTGACGTTGCTGTGAGACCAGTTTTGAAGGAATCGGAGCATTGGCAAGAGCGTTGCTCTGGCGAATCAATCCTGATATATCTAACCGTAAATGGTGCAGTGACACCAATGCGTGTGGTGGAGTCAGATTCCATTGCTTCGGTGAAAATGAGGATTCAAACATGCAAAGGAATTGCAAGGAAGAATCATAAACTGGTTTACGGTGGTAGAGAACTTGCACGCAAGGATGCACTCATCAAGGACTATGGTGTCACTGCGGGCAACGTGCTTCACTTGGTTCTCCGTCTCTCCGACATGATCTTCATTGTTGTGAGAACCATCTGTGGGAAGGAGTTTGAGTTTCAGATTGGTCGACATAGAAATGTAGGGTATCTTAAACAGCGCATCAAGAAGAAGAAGGGGAAAGGTTTCATTGATCTTAAGGGCCAAGAACTTTTCTGTGGTGGGGAAGAGCTGCATGACCAAAGGCTTTTTCGTGATTTATGCAACGCCAATGATGTTGATGGTGTCATTCATTTGGTCGTTAAGAAATCAGCAAAGGTTAAAGCCAAACCGGTTCAAAAGGATTTGGAGCTTTCAGTTGTTGCTGATGAAGCCTTTGGGGTGGCAAAGAATCATGCGACGCCAAGGCTACCACCTAGGTTAGATTTCTGGTTGGAACCCGTTGTAGGGAATCCCAAGGTCGATTTTTTTCCTTTCCTTTGGGACTTGATCGGGTCCACATACGATGGTTTGGAGAAAGGAAACAAACCTGTGAGGTCTTCGGAGGGCACAGGTGGGACTTACTTCATGCAAGATTCAACTGGTATGGAGTATGTTTCAGTTTTCAAGCCCATCGATGAGGAGCCAAATGCAGTTAATAACCCACAAAGCCTACCGGTTTCCTTCAACGGTGAAGGCTTGAAAATAGGGACAAAGGTTGGAGAAGGAGCTATGAGAGAAGTTGCAGCCTATATATTAGATCATCCAAGGGGTGGGCCACGATTGGTGACAGGTGAAGCAATAGGCTTCTCTGGGGTTCCCCCAACTATCATGGTGCAGTGCTTACACCAAGCCTTTAACCACCCAAATGGCTTTGATTGCTCTTCAAAGCATTCCAAGATGGGGTCATTGCAGATGTTTATGAACAATGATGGCAACTGTGAGGATCTTGGACCAGGGGCTTTTTCTGTACAAGAGGTGCATAAGATCACCGTGCTTGATCTAAGAATGGCTAATGCAGATAGGCATGCGGGAAATATATTGTATAAAAGAGAACCAAATGGACACACTTTGCTCATTCCCATTGATCATGGCTATTTAAATAAAATAAAAGTATGTTTTTTTTTTTCTGGACAGTTTGAGGACTGCACATTTGATTGGCTTTATTGGCCACAAGCACGGCAACCTTACTCTCCTGATACAGTTGATTATATAAAATCATTGGATGCAGAGAAAGACATAGAGCTTTTGAAATATTACGGGTGGGATGTTTCGGTTGAGTGTGCAAGAACACTCCGCATCTCCACAATGTTATTGAAGAAAGGGGTTGAGAGAGGTCTCAGTCCTTATGCAATTGGAAGCATTATGTGTAGGGCAAATTTGAACAAGGAATCTGTAATCGAGGAGATTATTTGTCAAGCCCAGGAATCATTGTTACCTGGCATCCAGGAATCTGTGTTTCTTGAATCTGTCTCCCAGATCATGGATTCCCGCCTTGATGACCTTTAA 1719 0.4404 MSVADVAVRPVLKESEHWQERCSGESILIYLTVNGAVTPMRVVESDSIASVKMRIQTCKGIARKNHKLVYGGRELARKDALIKDYGVTAGNVLHLVLRLSDMIFIVVRTICGKEFEFQIGRHRNVGYLKQRIKKKKGKGFIDLKGQELFCGGEELHDQRLFRDLCNANDVDGVIHLVVKKSAKVKAKPVQKDLELSVVADEAFGVAKNHATPRLPPRLDFWLEPVVGNPKVDFFPFLWDLIGSTYDGLEKGNKPVRSSEGTGGTYFMQDSTGMEYVSVFKPIDEEPNAVNNPQSLPVSFNGEGLKIGTKVGEGAMREVAAYILDHPRGGPRLVTGEAIGFSGVPPTIMVQCLHQAFNHPNGFDCSSKHSKMGSLQMFMNNDGNCEDLGPGAFSVQEVHKITVLDLRMANADRHAGNILYKREPNGHTLLIPIDHGYLNKIKVCFFFSGQFEDCTFDWLYWPQARQPYSPDTVDYIKSLDAEKDIELLKYYGWDVSVECARTLRISTMLLKKGVERGLSPYAIGSIMCRANLNKESVIEEIICQAQESLLPGIQESVFLESVSQIMDSRLDDL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01824 572 ProSiteProfiles Ubiquitin domain profile. 103 164 IPR000626 GO:0005515
Pste1g01824 572 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 37 547 IPR044571 -
Pste1g01824 572 Pfam Ubiquitin family 105 180 IPR000626 GO:0005515
Pste1g01824 572 Pfam Ubiquitin family 34 99 IPR000626 GO:0005515
Pste1g01824 572 Gene3D - 27 102 - -
Pste1g01824 572 Gene3D - 104 194 - -
Pste1g01824 572 ProSiteProfiles Ubiquitin domain profile. 29 102 IPR000626 GO:0005515
Pste1g01824 572 CDD Ubl_ubiquitin_like 105 176 - -
Pste1g01824 572 SMART ubq_7 27 98 IPR000626 GO:0005515
Pste1g01824 572 SMART ubq_7 103 179 IPR000626 GO:0005515
Pste1g01824 572 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 251 556 IPR000403 -
Pste1g01824 572 SUPERFAMILY Ubiquitin-like 31 100 IPR029071 -
Pste1g01824 572 Pfam Phosphatidylinositol 3- and 4-kinase 260 520 IPR000403 -
Pste1g01824 572 SUPERFAMILY Ubiquitin-like 103 188 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01824 Pste-Chr1 5599573 5601650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01824 1 570 Acyl Lipid Metabolism Gene Families AT5G24240 54.983 0.0 619
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01824 1 5599573 5601650 Pste1g01824 1 5599573 5601650 ECH
Pste1g01824 1 5599573 5601650 Pste6g01773 6 8062901 8066231 ECH
Pste1g01824 1 5599573 5601650 Pste3g00797 3 4941211 4943968 PCT