Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5903 ATGTCATCTCTGAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTTGATGAGGAAAAGTTCAAAGAAACTGTTCACAAGCTTGAGCAGGAGTCTGGATTTTTCTTTAACATGAAGTATTTTGAGGATGAAGTTCATGGTGGGAATTGGGATGAAGTGGAAAAGTACTTATCCGGTTTTACAAAAGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTCGAGGCTTTAGATAAGCATGATCGGTCGAAAGCTGTAGAGATATTAGTGAAGGATTTGAAAGTGTTTGCTACGTTTAACGAAGAGTTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAACAGTTGTCGAAGTATGGTGATACTAAGTCTGCGCGAGCAATCATGTTGGTTGAGCTTAAAAAGCTCATTGAAGCTAATCCGTTATTTCGCGACAAATTGCAATTTCCTAACCTTAAAAACTCAAGGTTAAGGACACTCATCAATCAAAGCTTGAATTGGCAACATCAACTTTGTAAGAATCCACGTCCGAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCGAATGGTGCACGAGCTCCTTCGCCTGCTAACAGTCCATTATTAGGATCCTTACCGAAAGCTGGTGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTTCAACCTAGTCCGGCATCTGTGCCAGCACAGCTCGCGGGTTGGATGTCAAATCCTACCACTGTAGCACATGCTGCAGTTTCGGGTGGAGGTGGTATCGGTGGAGGAGGTATAGGTCTTGGTGCTCCATCAATGCCTGGTGCTTTAAAGCATCCACGGACGCCTCCTACTAATCCTTCTGTCGACTATCCGTCCGGTGGAGACTCGGACCATGTTACAAAGAGAACAAGGCCAATGGGAATAACTGACGAGGTAAATCTACCTGTGAATGTGTTGTCGGCGTCATTCCCTGGTCATGGTCATAGTCAGGCTTTTAATGCACCTGATGACTTGCCGTTGCCGAAGACTGTCATGCGAAATCTGATTCAGGGCTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTAGTTGGTACAAATGTGGGAGACATTGCCTTATGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCGAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGGCATTTCAGGCTGCTCTTGTCAAAGATCCAAGTGTTTCTGTTAACCGTGTGATTTGGAGTCCGGACGGTGCTTTATTTGGAGTTGCATACTCAAGGCACATTGTTCAGATATACTCTTACCATGGCGGTGATGAAGTTCGGCAGCACTTAGAGATTGATGCTCATGCCGGAGGAGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAACTGTGCGTGATAACTTGCGGTGATGATAAAACCATTAAGGTGTGGGATGCTGCATCGGGAACAAAACAATATACGTTTGAAGGTCACGAGGCTCCGGTTTATTCTGTCTGTCCGCATTATAAAGAAAATATTCAGTTCATCTTTTCAACAGCGCTAGATGGAAAAATAAAAGCATGGCTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCTTATAGTGCTGACGGTACAAGGCTCTTTTCATGTGGAACAAGCAAAGATGGAGATTCCTCAATTGTGGAGTGGAATGAAAGTGAAGGAGCCGTGAAAAGAACTTACCAAGGATTTCGCAAACGATCTTTGGGTGTTGTGCAATTCGATACGACCAAAAATCGATTTTTGGCCGCCGGAGATGATTTCTCCATTAAATTCTGGGATATGGACAATGTTCAGCTTTTGACAACTGTTGAAGCTGATGGGGGTCTTCCTGCAAGTCCACGTATTCGTTTCAACAAGGATGGAACTCTTTTAGCCGTCTCAACAAACGACAATGGAATCAAAATTATAGCCAATGCAGACGGCATCCGTTTGTTGCGTACATTAGAGAATTCTATGTATGATGCTTCAAGAGCATCAGAATCCTTGGTAAAGCCTACGATAAATTCAATGTCTTCTGCTGCGGCCACAACTAGTGCTGCATTAGCTGAGAGAGCCTCGTCTGTAGCAGCTATTGCTGGAATGAATGGTGATACTCGAAACATGGGCGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCATTGTAGATCCTTGAAGCTACCAGAGAATGTTAGAGTAAACAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTAGCATTAGCATCAAATGCCATTCACCTTCTCTGGAAATGGCCGCGAAATGAACGTAACTCATCTGCCAAGGCCAATGCATCTGTGCAACCTCAGCTGTGGCAACCGTCGAGCGGCATCCTGATGACTAATGACACCGCCGATAGCAATCCTGAAGATTCTGTTCCTTGCTTTGCTCTGTCCAAAAATGATTCGTATGTAATGTCTGCGTCGGGAGGGAAGATTTCCTTGTTTAACATGATGACTTTTAAGACAATGACAACTTTCATGGCCTCACCACCGGCAGCTACATTTCTTGCTTTCCATCCTCAAGATAACAATATTATTGCTATAGGCATGGATGATTCCTCCATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTTCTTGTTTCATCTGGAGCGGATGCTCAGATTTGCGTGTGGAACACCGACGGATGGGAAAAACAGAAGAGTAGATTCTTGCAGCTGCCTCCCGGGAGGACTCCATCGGCACAGTCAGATACGCGCGTACAGTTTCATCAGGATCAGATACAGTTCTTGGTTGTACACGAAACTCAGCTAGCCATTTTCGAAGCAACTAAACTAGAATGTCTAAAGCAGTGGGCCCCGCGTGAATCTTCTGCACCAATATCGCATGCAACATTTTCGTGTGACAGCCAGCTGATATATGCAAGCTTTTTAGACGCAACCGTCTGTGTATTTAATGCTTCCAATCTCAGATTACGGTGTCGTATCAATCCTTCAGCTTATCTTCCTGCAAGTGTCAGCAATTCAAATGTGCAACCACTAGTAATCGCGGCACATCCACAAGAACCAAACCAGTTTGCTGTAGGACTATCAGACGGCGGAGTTCACGTGTTCGAGCCACTAGAATCGGAAGCGAAATGGGTCAACCACTAG 3351 0.4348 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHGGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPSPASVPAQLAGWMSNPTTVAHAAVSGGGGIGGGGIGLGAPSMPGALKHPRTPPTNPSVDYPSGGDSDHVTKRTRPMGITDEVNLPVNVLSASFPGHGHSQAFNAPDDLPLPKTVMRNLIQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMAFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHAGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVEADGGLPASPRIRFNKDGTLLAVSTNDNGIKIIANADGIRLLRTLENSMYDASRASESLVKPTINSMSSAAATTSAALAERASSVAAIAGMNGDTRNMGDVKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSAKANASVQPQLWQPSSGILMTNDTADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMASPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRESSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPSAYLPASVSNSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEAKWVNH* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5903 1116 Gene3D - 338 552 IPR015943 GO:0005515
Psa7g5903 1116 SMART ctlh 34 92 IPR006595 -
Psa7g5903 1116 CDD WD40 366 674 - -
Psa7g5903 1116 Gene3D - 553 699 IPR015943 GO:0005515
Psa7g5903 1116 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 511 964 IPR011047 -
Psa7g5903 1116 ProSitePatterns Trp-Asp (WD) repeats signature. 486 500 IPR019775 -
Psa7g5903 1116 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 465 503 - -
Psa7g5903 1116 SMART Lish 4 36 IPR006594 GO:0005515
Psa7g5903 1116 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1113 IPR027728 GO:0006355
Psa7g5903 1116 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 641 IPR001680 GO:0005515
Psa7g5903 1116 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 927 959 - -
Psa7g5903 1116 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Psa7g5903 1116 ProSiteProfiles Trp-Asp (WD) repeats profile. 927 968 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 592 632 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 502 543 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 352 391 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 412 452 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 877 917 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 920 959 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 1011 1052 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 458 499 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 1065 1105 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 832 874 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 635 676 IPR001680 GO:0005515
Psa7g5903 1116 SMART WD40_4 546 589 IPR001680 GO:0005515
Psa7g5903 1116 Pfam WD domain, G-beta repeat 465 499 IPR001680 GO:0005515
Psa7g5903 1116 Pfam WD domain, G-beta repeat 926 959 IPR001680 GO:0005515
Psa7g5903 1116 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 360 578 IPR011047 -
Psa7g5903 1116 MobiDBLite consensus disorder prediction 290 310 - -
Psa7g5903 1116 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 928 1107 - -
Psa7g5903 1116 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1113 - -
Psa7g5903 1116 Gene3D - 810 1106 IPR015943 GO:0005515
Psa7g5903 1116 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Psa7g5903 1116 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 508 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5903 Psa-Chr7 486522128 486528308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5903 464 674 Miscellaneous Gene Families AT5G08390 22.275 2.65e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5903 - - gmx:100795759 2063.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5903 7 486522128 486528308 Psa5g6970 5 571579810 571585368 ECH
Psa7g5903 7 486522128 486528308 Psa7g5903 7 486522128 486528308 ECH