Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6970 ATGTGCACGGGCTCCATCACCTGCCAATATGCCACTACTAGGATCCTTACCGAAGGTTGGAGGATTTCCTCCTCTCGGTGCAACATGGGCCGTTTCAACAACTCCAGCACCTGTGCCATGCCCCTGGGTGGTTGGATGTCCAAATCCTACCACTGTAGGGGGGGGGGCCCCCCACCCAAAGACATGGGGGCCTCGGTTTCTTGGGAGGGGAACGGGGGGAAAGCTAAGGTCTTGGTGTTGTGCACATCAATGCCTGCTGCTTTGAAGCACCCTAGGACACCTCCAACTAATCCTTCTGTTGACTACCCATCCGCGGATTCAGATCATGTTTCTAAGAGAACAAGACCAATAGGAATGTCCGATGAGGGAAACCTACCTGTTAATGTTTTGTCGGCAACGTTTCCGGGGCATGGTCACGGTCATGGTCAGGCTTTTAATTCACCCGAGGACTTGCCAAAGACTGTCATGCGAACTCTAAATCAAGGCTCGTCTCCTATGAGCATGGACTTTCATCCAGTTCAACAGACTTTACTTCTTGTTGGTACAAATGTGGCGGACATTGGTTTATGGGAATTGGGCTCTAGGGAGCGGTTGGTCTTGAGGAACTTCAAAGTTTGGGATCTGAGTGCTTGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAGCTGTTTCTGTCAATCGTGTGACTTGGAGTCCAGACGGAGCTTTGTTTGGAGTAGCCTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGCGGGGAGGAAGTACGACAACACTTGGAGATTGACGCTCATGTCGGCGGAGTAAACGATCTAGCATTTTCTCACCCAAATAAGCAGCTGTGTGTGATCACCTGCGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTACGGGTATAAAGCAGTACACTTTCGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACGGCATTAGATGAAAAAATAAAGCATGGTTATATGACAATTGGGATCTCTGCTGATGGTACTAGACTCTTTTCTTGTGGGACTAGCAAGGACGGGGAATCCTCTATTGTCGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGAACTTACCAAGGATTTCGGAAACGATCTTTGGGTGTTGTACAATTTGATACAACCAAAAATCGATATCTGGCTGCTGGTGATGATTTCTCCATTAAATTTTGGGAGATGGATAATATTCAGCTTTTGACAACTGTTGATGCTGAAGGGGGTCTTCCTGCAAGCCCTCGTATCCGTTTCAATAAGGATGGATCTCTTTTAGCCGTCTCTGCAAATGATAATGGAATTAAAATCTTAGGCAATGGAGATGGTATTCGTTTATTGCGCTCATTAGAGAATTCTTTATATGATGCATCAAGAACATCAGAAGCCATGACAAAGCCTACAATAAACCCAATGTCAGTTGCTACTGCTGCAACTAGTGCTGCACTTACAGAGAGAGCCTCAACCGTGGCAGCTATTGCTGGAATGAACGGGGATGCTCGGAGTTTAGGTGATATTAAACCTAGAATAAGCGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAAAGAACCATCTCATTGTAGATCCTTGAAGCTACCTGAAAATGCAAGAGTAACCAAGATATCGAGGTTGATATATACTAATTCAGGCAATGCTATTCTGGCATTAGCTTCAAATGCCATTCATCTTCTTTGGAAATGGCAAAGAAATGAGCGTAATTCGTCCGGCAAGGCCACTGCTAGTGTGCCACCTCAGTTGTGGCAACCTTCAAGTGGCATTCTGATGACTAATGACATTAATGATAACAATACCGAGGATGCAGTTCCATGTTTTGCTCTTTCGAAAAATGATTCTTACGTAATGTCAGCATCAGGTGGAAAGATATCTCTGTTCAATATGATGACTTTTAAGACAATGACAACGTTCATGCCACCGCCGCCTGCAGCAACCTTTCTGGCTTTCCATCCGCAGGATAACAATATTATTGCTATAGGCATGGACGATTCTTCCATTCAGATTTATAATGTCCGCGTAGATGAGGTTAAAAGTAAACTCAATGGCCATACTAAAAGAATTACCGGTCTTGCATTTTCTCATGTACTGAACGTACTAGTTTCATCTGGTGCAGATGCTCAGATTTGTGTATGGAATACTGATGGATGGGAGAAGCAGAAGAATAGATTCTTGCAATTTCTGGCGGGGAGAACTCCACCAGCACAGGCAGATACACGTGTACAATTTCATCAGGATCAGTTCCGCTTCTTGGTGGTACATGAAACTCAGCTTGCCATTTATGAGGCAACAAAACTAGAATGCTTAAAGCAGTGGTTCCCACGAGATTCTGCTGCACCAATATCACATGCAACTTTCTCATGTGATAGCCAGCTAGTATTTGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAACCTTCGATTGCGATGTCGTATCAATCCTTCTGCTTATCTTTCTGCAAATATCAGTTCTAACGTTCAACCGCTTGTAATCGCTGCACATCCACAAGAACCAAATCAGTTTGCTGCTGGACTGTCAGATGGTATAGTTCATGTGTTTGAGCCCCTTGAATCTGAAGGCAAGTGGGGTGTGCCTCCACCCATTGAGAATGGATCATCAAGCAATATGGTAGTTTCTTCGGTTGGTGCTTCTTCTGATGAACCCCAAAGATGA 2772 0.4441 MCTGSITCQYATTRILTEGWRISSSRCNMGRFNNSSTCAMPLGGWMSKSYHCRGGGPPPKDMGASVSWEGNGGKAKVLVLCTSMPAALKHPRTPPTNPSVDYPSADSDHVSKRTRPIGMSDEGNLPVNVLSATFPGHGHGHGQAFNSPEDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGEEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGIKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDEKIKHGYMTIGISADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWEMDNIQLLTTVDAEGGLPASPRIRFNKDGSLLAVSANDNGIKILGNGDGIRLLRSLENSLYDASRTSEAMTKPTINPMSVATAATSAALTERASTVAAIAGMNGDARSLGDIKPRISEESNDKSKIWKLTEIKEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATASVPPQLWQPSSGILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLNGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKNRFLQFLAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDSAAPISHATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSAYLSANISSNVQPLVIAAHPQEPNQFAAGLSDGIVHVFEPLESEGKWGVPPPIENGSSSNMVVSSVGASSDEPQR* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6970 923 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Psa5g6970 923 Gene3D - 340 510 IPR015943 GO:0005515
Psa5g6970 923 SMART WD40_4 615 657 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 703 742 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 375 415 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 258 299 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 794 835 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 848 887 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 152 191 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 418 459 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 302 343 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 660 700 IPR001680 GO:0005515
Psa5g6970 923 SMART WD40_4 213 252 IPR001680 GO:0005515
Psa5g6970 923 Pfam WD domain, G-beta repeat 265 299 IPR001680 GO:0005515
Psa5g6970 923 Pfam WD domain, G-beta repeat 709 742 IPR001680 GO:0005515
Psa5g6970 923 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 37 923 IPR027728 GO:0006355
Psa5g6970 923 MobiDBLite consensus disorder prediction 88 112 - -
Psa5g6970 923 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 344 892 IPR011047 -
Psa5g6970 923 Gene3D - 132 339 IPR015943 GO:0005515
Psa5g6970 923 MobiDBLite consensus disorder prediction 901 923 - -
Psa5g6970 923 ProSiteProfiles Trp-Asp (WD) repeats profile. 710 742 IPR001680 GO:0005515
Psa5g6970 923 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 308 IPR001680 GO:0005515
Psa5g6970 923 SUPERFAMILY WD40 repeat-like 153 457 IPR036322 GO:0005515
Psa5g6970 923 MobiDBLite consensus disorder prediction 894 923 - -
Psa5g6970 923 Gene3D - 768 920 IPR015943 GO:0005515
Psa5g6970 923 Gene3D - 529 757 IPR015943 GO:0005515
Psa5g6970 923 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 710 742 - -
Psa5g6970 923 PANTHER TOPLESS-LIKE PROTEIN 37 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6970 Psa-Chr5 571579810 571585368 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6970 - - gmx:100790282 1508.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5903 7 486522128 486528308 Psa5g6970 5 571579810 571585368 ECH
Psa5g6970 5 571579810 571585368 Psa5g6970 5 571579810 571585368 ECH