Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5826 ATGTCAAAGACAGATACTACAACACAACCTAGTTGTTCCACTACATTATTTGAGCTTCTAACAGAAATGAAGAACCAATCCAACATAGAGCAATCCAATTTCCAACCAAAATCACCATCAAATTTCACCTCAGAATGCTGGTTCGACGACGCGTGCATTCTAGACATGGATTACTTTGTGAAAACACTTTCTGGAATCAAAGCAAAAGGCGTTCGTGCCGATTTAATCGGTTCCATTATCACACACTATGCCTCCAAATGGCTACCTGACTTAGCTGAAAAGGGTCTAACACAATTTGAAGATACATCGTCGTCACCCGAGAGTGTAACAGCTTTATGGATGAAGAAAAGGTTCTTTGTAGAAACCTTAGTTAATGTTCTACCACCAGAGAAAGATTCAATTCCATGTAACTTCTTACTCAGGCTATTAAGAACTGCTAACATGGTTGGTGTTGATGGAAGCTATAGACAAGAGCTTGAGAAGAGAATTTCATGGCAGTTAGATCAAGCTTGTCTGAAAGAACTTGTTATACCTTCTTTTAGTCACACTTGTGGAACACTTTTGGATTTTGAACTTGTGATTAGGCTTGTTAAGAGGTTTGTTAGTTTGGATAATGAAGGTGCTAAAAGTGGTGCTGCTTTGGTTAAAGTTGCTAAGTTGGTTGATTCTTATCTTGCTGAAGCTGCTGTTGATGCTAATTTGAGTTTGAATGAGTTTGTTACTCTTGCTGCTATTCTTCCAAATCATGCTAGAAATACTGATGATGGTTTGTATAGAGCCATTGATACTTACCTAAAAGCACATCCAAGTGTGTCAAAGCAAGAAAGGAAAGGTCTATGCAGACTAATAGATTGCAGGAAACTAACACAAGAGGCATCACTTCATGCGGCGCAAAACGAACGGTTCCCGGTGAGAGCAGTAATTCAAGTCCTTCTTTCTGAACAAACAAAGTTCAACAGACACAACAACAGTCACAACATTGATTGGAGTGGATCCATAATGAGTATAACCAGAAGTCCAACAAATGGATTCGGACTAGAAGCAGTTCCAACGGCAAGGTGTTTATCGAAGCGCGAAATGAATGCTCAACACGTCGAGATAAAGAAACTGAGGGAAGATGTTCATAGGCTGCAGAATCAGTGCAATGCAATGCAAATTCAGATGGAGAGAATGGTTGAGAAGAAGAAAGGGTTTTTTAAATGGAGTAAGAGGTTTGGTGTGAGTGGTTTTGTGAAAGGAGAGAGTGTTGTGGAAGGAAGAAGAGGATATGGTGATGGTCAGGTTGAGTTTGGAGGACAGACACCTGCACCTGCTGCTAGTTCTGATATGAAGACTAGGTTGGTTAATGTCAAAGGAAATTGA 1362 0.4001 MSKTDTTTQPSCSTTLFELLTEMKNQSNIEQSNFQPKSPSNFTSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLAEKGLTQFEDTSSSPESVTALWMKKRFFVETLVNVLPPEKDSIPCNFLLRLLRTANMVGVDGSYRQELEKRISWQLDQACLKELVIPSFSHTCGTLLDFELVIRLVKRFVSLDNEGAKSGAALVKVAKLVDSYLAEAAVDANLSLNEFVTLAAILPNHARNTDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKFNRHNNSHNIDWSGSIMSITRSPTNGFGLEAVPTARCLSKREMNAQHVEIKKLREDVHRLQNQCNAMQIQMERMVEKKKGFFKWSKRFGVSGFVKGESVVEGRRGYGDGQVEFGGQTPAPAASSDMKTRLVNVKGN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5826 453 Pfam NPH3 family 46 293 IPR027356 -
Psa7g5826 453 ProSiteProfiles NPH3 domain profile. 45 317 IPR027356 -
Psa7g5826 453 Coils Coil 360 394 - -
Psa7g5826 453 PANTHER OS12G0117600 PROTEIN 3 452 IPR043454 -
Psa7g5826 453 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 3 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5826 Psa-Chr7 484258023 484259765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5826 44 392 EF-hand Containing Proteins AT3G44820 33.158 6.21e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5826 - - cam:101500573 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5826 7 484258023 484259765 Psa7g5826 7 484258023 484259765 ECH
Psa5g6901 5 568431753 568433575 Psa7g5826 7 484258023 484259765 PCT